Difference between revisions of "RXN-11999"

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(Created page with "Category:reaction == Reaction BIOTIN-CARBOXYL-RXN == * direction: ** left-to-right * common-name: ** biotin carboxylase * ec-number: ** [http://enzyme.expasy.org/EC/6.3.4....")
(Created page with "Category:reaction == Reaction RXN-11999 == * direction: ** left-to-right == Reaction formula == * 1 CPD-12932[c] '''=>''' 1 CPD-12936[c] == Gene(s) associated with...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction BIOTIN-CARBOXYL-RXN ==
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== Reaction RXN-11999 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
* common-name:
 
** biotin carboxylase
 
* ec-number:
 
** [http://enzyme.expasy.org/EC/6.3.4.14 ec-6.3.4.14]
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[biotin-L-lysine-in-BCCP-dimers]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[carboxybiotin-L-lysine-in-BCCP-dimers]][c]
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* 1 [[CPD-12932]][c] '''=>''' 1 [[CPD-12936]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* Gene: [[SJ10882]]
* Gene: [[SJ14528]]
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** Category: [[orthology]]
** Category: [[annotation]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ09694]]
* Gene: [[SJ12870]]
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** Category: [[orthology]]
** Category: [[annotation]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ18790]]
* Gene: [[SJ02214]]
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** Category: [[orthology]]
** Category: [[annotation]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ17463]]
* Gene: [[SJ12670]]
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** Category: [[orthology]]
** Category: [[annotation]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ17987]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ00485]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ14529]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ06726]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-5744]], glyoxylate assimilation:
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* [[PWY-6681]], neurosporaxanthin biosynthesis:
** '''4''' reactions found over '''13''' reactions in the full pathway
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** '''3''' reactions found over '''7''' reactions in the full pathway
* [[PWY-5743]], 3-hydroxypropanoate cycle:
 
** '''5''' reactions found over '''13''' reactions in the full pathway
 
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle:
 
** '''8''' reactions found over '''18''' reactions in the full pathway
 
* [[PWY0-1264]], biotin-carboxyl carrier protein assembly:
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* METANETX-RXN : MNXR117278
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13502 13502]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R04385 R04385]
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/Q06862 Q06862]
 
** [http://www.uniprot.org/uniprot/O67483 O67483]
 
** [http://www.uniprot.org/uniprot/Q9CHF3 Q9CHF3]
 
** [http://www.uniprot.org/uniprot/Q58626 Q58626]
 
** [http://www.uniprot.org/uniprot/P43873 P43873]
 
** [http://www.uniprot.org/uniprot/Q9PN09 Q9PN09]
 
** [http://www.uniprot.org/uniprot/Q9JW07 Q9JW07]
 
** [http://www.uniprot.org/uniprot/P24182 P24182]
 
** [http://www.uniprot.org/uniprot/O04983 O04983]
 
** [http://www.uniprot.org/uniprot/O81273 O81273]
 
** [http://www.uniprot.org/uniprot/Q42777 Q42777]
 
** [http://www.uniprot.org/uniprot/Q39825 Q39825]
 
** [http://www.uniprot.org/uniprot/O23960 O23960]
 
** [http://www.uniprot.org/uniprot/O52602 O52602]
 
** [http://www.uniprot.org/uniprot/Q9R9I4 Q9R9I4]
 
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=biotin carboxylase}}
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{{#set: nb gene associated=4}}
{{#set: ec-number=ec-6.3.4.14}}
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{{#set: nb pathway associated=1}}
{{#set: nb gene associated=8}}
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{{#set: reconstruction category=orthology}}
{{#set: nb pathway associated=4}}
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{{#set: reconstruction tool=pantograph}}
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Latest revision as of 11:24, 18 March 2021

Reaction RXN-11999

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6681, neurosporaxanthin biosynthesis:
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR117278