Difference between revisions of "RXN-12160"

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(Created page with "Category:reaction == Reaction HISTPRATPHYD-RXN == * direction: ** left-to-right * common-name: ** phosphoribosyl-atp pyrophosphatase * ec-number: ** [http://enzyme.expasy....")
(Created page with "Category:reaction == Reaction RXN0-2382 == * direction: ** left-to-right * common-name: ** tryptophan synthase * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.122 ec-4....")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction HISTPRATPHYD-RXN ==
+
== Reaction RXN0-2382 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** phosphoribosyl-atp pyrophosphatase
+
** tryptophan synthase
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/3.6.1.31 ec-3.6.1.31]
+
** [http://enzyme.expasy.org/EC/4.2.1.122 ec-4.2.1.122]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[PHOSPHORIBOSYL-ATP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PHOSPHORIBOSYL-AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 2 [[PROTON]][c]
+
* 1 [[INDOLE]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ07444]]
+
* Gene: [[SJ09991]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16706]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20325]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ15468]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10955]]
 +
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[HISTSYN-PWY]], L-histidine biosynthesis:
+
* [[TRPSYN-PWY]], L-tryptophan biosynthesis:
** '''10''' reactions found over '''10''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22829 22829]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26435 26435]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R04035 R04035]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00674 R00674]
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/P44434 P44434]
 
** [http://www.uniprot.org/uniprot/Q9X0C5 Q9X0C5]
 
** [http://www.uniprot.org/uniprot/Q9PM71 Q9PM71]
 
** [http://www.uniprot.org/uniprot/Q02130 Q02130]
 
** [http://www.uniprot.org/uniprot/Q9RWD6 Q9RWD6]
 
** [http://www.uniprot.org/uniprot/Q9K0J4 Q9K0J4]
 
** [http://www.uniprot.org/uniprot/O34912 O34912]
 
** [http://www.uniprot.org/uniprot/P0A5B1 P0A5B1]
 
** [http://www.uniprot.org/uniprot/Q9KSW7 Q9KSW7]
 
** [http://www.uniprot.org/uniprot/Q9HUB6 Q9HUB6]
 
** [http://www.uniprot.org/uniprot/Q57750 Q57750]
 
** [http://www.uniprot.org/uniprot/O27344 O27344]
 
** [http://www.uniprot.org/uniprot/Q9JVJ9 Q9JVJ9]
 
** [http://www.uniprot.org/uniprot/O67780 O67780]
 
** [http://www.uniprot.org/uniprot/Q9PBD1 Q9PBD1]
 
** [http://www.uniprot.org/uniprot/P26722 P26722]
 
** [http://www.uniprot.org/uniprot/P45353 P45353]
 
** [http://www.uniprot.org/uniprot/Q12670 Q12670]
 
** [http://www.uniprot.org/uniprot/P50935 P50935]
 
** [http://www.uniprot.org/uniprot/P00815 P00815]
 
** [http://www.uniprot.org/uniprot/P07685 P07685]
 
** [http://www.uniprot.org/uniprot/O59667 O59667]
 
** [http://www.uniprot.org/uniprot/O82768 O82768]
 
** [http://www.uniprot.org/uniprot/P10367 P10367]
 
** [http://www.uniprot.org/uniprot/P06989 P06989]
 
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=phosphoribosyl-atp pyrophosphatase}}
+
{{#set: common-name=tryptophan synthase}}
{{#set: ec-number=ec-3.6.1.31}}
+
{{#set: ec-number=ec-4.2.1.122}}
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=5}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:20, 14 January 2021

Reaction RXN0-2382

  • direction:
    • left-to-right
  • common-name:
    • tryptophan synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRPSYN-PWY, L-tryptophan biosynthesis:
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links