Difference between revisions of "RXN-12198"

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(Created page with "Category:reaction == Reaction RXN-8675 == * direction: ** left-to-right * common-name: ** s-adenosyl-l-methionine:precorrin-1 c-methyltransferase * synonymous: ** uroporph...")
(Created page with "Category:reaction == Reaction RXN-12198 == * direction: ** left-to-right * common-name: ** nucleoside-diphosphatase ** cdp phosphatase * ec-number: ** [http://enzyme.expas...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-8675 ==
+
== Reaction RXN-12198 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** s-adenosyl-l-methionine:precorrin-1 c-methyltransferase
+
** nucleoside-diphosphatase
* synonymous:
+
** cdp phosphatase
** uroporphyrinogen methyltransferase
+
* ec-number:
** uroporphyrinogen-iii methyltransferase
+
** [http://enzyme.expasy.org/EC/3.6.1.6 ec-3.6.1.6]
** s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase
 
** sira
 
** adenosylmethionine-uroporphyrinogen iii methyltransferase
 
** s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)
 
** uroporphyrin-iii c-methyltransferase (incorrect)
 
** cysg
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[CPD-9038]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DIHYDROSIROHYDROCHLORIN]][c]
+
* 1 [[CDP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ12313]]
+
* Gene: [[SJ16444]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ00842]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04502]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-7376]], cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation):
 
** '''2''' reactions found over '''13''' reactions in the full pathway
 
* [[PWY-7377]], cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion):
 
** '''4''' reactions found over '''15''' reactions in the full pathway
 
* [[PWY-5196]], factor 430 biosynthesis:
 
** '''3''' reactions found over '''7''' reactions in the full pathway
 
* [[PWY-5194]], siroheme biosynthesis:
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
* RHEA:
+
* METANETX-RXN : MNXR96559
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21973 21973]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R07238 R07238]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00514 R00514]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=s-adenosyl-l-methionine:precorrin-1 c-methyltransferase}}
+
{{#set: common-name=cdp phosphatase|nucleoside-diphosphatase}}
{{#set: synonymous=uroporphyrinogen methyltransferase|uroporphyrin-iii c-methyltransferase (incorrect)|uroporphyrinogen-iii methyltransferase|s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase|cysg|sira|adenosylmethionine-uroporphyrinogen iii methyltransferase|s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)}}
+
{{#set: ec-number=ec-3.6.1.6}}
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=3}}
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=0}}
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction RXN-12198

  • direction:
    • left-to-right
  • common-name:
    • nucleoside-diphosphatase
    • cdp phosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR96559
  • LIGAND-RXN: