Difference between revisions of "RXN-13414"

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(Created page with "Category:reaction == Reaction ARGSUCCINSYN-RXN == * direction: ** left-to-right * common-name: ** argininosuccinate synthase * ec-number: ** [http://enzyme.expasy.org/EC/6...")
(Created page with "Category:reaction == Reaction TRYPTOPHAN--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** tryptophan-trna ligase * ec-number: ** [http://enzyme.expasy.o...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction ARGSUCCINSYN-RXN ==
+
== Reaction TRYPTOPHAN--TRNA-LIGASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** argininosuccinate synthase
+
** tryptophan-trna ligase
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/6.3.4.5 ec-6.3.4.5]
+
** [http://enzyme.expasy.org/EC/6.1.1.2 ec-6.1.1.2]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''+''' 1 [[L-CITRULLINE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[L-ARGININO-SUCCINATE]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[TRP-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-TRP-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ10377]]
+
* Gene: [[SJ20749]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21092]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ02283]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria):
+
* [[TRNA-CHARGING-PWY]], tRNA charging:
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
* [[PWY-4984]], urea cycle:
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine):
 
** '''5''' reactions found over '''4''' reactions in the full pathway
 
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle):
 
** '''9''' reactions found over '''9''' reactions in the full pathway
 
* [[PWY-4983]], nitric oxide biosynthesis II (mammals):
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline):
 
** '''8''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10932 10932]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24081 24081]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R01954 R01954]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03664 R03664]
 
* UNIPROT:
 
* UNIPROT:
** [http://www.uniprot.org/uniprot/P22768 P22768]
+
** [http://www.uniprot.org/uniprot/P23381 P23381]
** [http://www.uniprot.org/uniprot/P0A6E4 P0A6E4]
+
** [http://www.uniprot.org/uniprot/Q9ZD76 Q9ZD76]
** [http://www.uniprot.org/uniprot/P00966 P00966]
+
** [http://www.uniprot.org/uniprot/O84589 O84589]
** [http://www.uniprot.org/uniprot/P16460 P16460]
+
** [http://www.uniprot.org/uniprot/Q9PIB4 Q9PIB4]
** [http://www.uniprot.org/uniprot/P13256 P13256]
+
** [http://www.uniprot.org/uniprot/Q9CJD1 Q9CJD1]
** [http://www.uniprot.org/uniprot/P13257 P13257]
+
** [http://www.uniprot.org/uniprot/P43835 P43835]
** [http://www.uniprot.org/uniprot/P09034 P09034]
+
** [http://www.uniprot.org/uniprot/Q9Z7A4 Q9Z7A4]
** [http://www.uniprot.org/uniprot/P24532 P24532]
+
** [http://www.uniprot.org/uniprot/Q9WYW2 Q9WYW2]
** [http://www.uniprot.org/uniprot/Q9PHK7 Q9PHK7]
+
** [http://www.uniprot.org/uniprot/O26352 O26352]
** [http://www.uniprot.org/uniprot/P57799 P57799]
+
** [http://www.uniprot.org/uniprot/O51038 O51038]
** [http://www.uniprot.org/uniprot/Q60174 Q60174]
+
** [http://www.uniprot.org/uniprot/Q9ZJX4 Q9ZJX4]
** [http://www.uniprot.org/uniprot/P44315 P44315]
+
** [http://www.uniprot.org/uniprot/Q9JTQ0 Q9JTQ0]
** [http://www.uniprot.org/uniprot/Q9JWM1 Q9JWM1]
+
** [http://www.uniprot.org/uniprot/Q58810 Q58810]
** [http://www.uniprot.org/uniprot/P50986 P50986]
+
** [http://www.uniprot.org/uniprot/O83640 O83640]
** [http://www.uniprot.org/uniprot/Q06734 Q06734]
+
** [http://www.uniprot.org/uniprot/P67590 P67590]
** [http://www.uniprot.org/uniprot/P0C1A1 P0C1A1]
+
** [http://www.uniprot.org/uniprot/O67115 O67115]
** [http://www.uniprot.org/uniprot/Q59491 Q59491]
+
** [http://www.uniprot.org/uniprot/P47372 P47372]
 +
** [http://www.uniprot.org/uniprot/P32921 P32921]
 +
** [http://www.uniprot.org/uniprot/Q12109 Q12109]
 +
** [http://www.uniprot.org/uniprot/Q49901 Q49901]
 +
** [http://www.uniprot.org/uniprot/P75510 P75510]
 +
** [http://www.uniprot.org/uniprot/O42875 O42875]
 +
** [http://www.uniprot.org/uniprot/O96771 O96771]
 +
** [http://www.uniprot.org/uniprot/P17248 P17248]
 +
** [http://www.uniprot.org/uniprot/P21656 P21656]
 +
** [http://www.uniprot.org/uniprot/P04803 P04803]
 +
** [http://www.uniprot.org/uniprot/P00954 P00954]
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=argininosuccinate synthase}}
+
{{#set: common-name=tryptophan-trna ligase}}
{{#set: ec-number=ec-6.3.4.5}}
+
{{#set: ec-number=ec-6.1.1.2}}
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=3}}
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:07, 14 January 2021

Reaction TRYPTOPHAN--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • tryptophan-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links