Difference between revisions of "RXN-13682"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6075 PWY-6075] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-4751 tax-47...")
(Created page with "Category:reaction == Reaction RXN0-901 == * direction: ** reversible * common-name: ** xanthine:nad+ oxidoreductase * ec-number: ** [http://enzyme.expasy.org/EC/1.17.1.4 e...")
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[[Category:pathway]]
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[[Category:reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6075 PWY-6075] ==
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== Reaction RXN0-901 ==
* taxonomic-range:
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* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=tax-4751 tax-4751]
+
** reversible
 
* common-name:
 
* common-name:
** ergosterol biosynthesis i
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** xanthine:nad+ oxidoreductase
== Reaction(s) found ==
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* ec-number:
* [[RXN3O-178]]
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** [http://enzyme.expasy.org/EC/1.17.1.4 ec-1.17.1.4]
* [[RXN3O-203]]
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== Reaction formula ==
* [[RXN3O-218]]
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* 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[XANTHINE]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[URATE]][c]
== Reaction(s) not found ==
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== Gene(s) associated with this reaction  ==
* [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-227 RXN3O-227]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
* [http://metacyc.org/META/NEW-IMAGE?object=1.3.1.71-RXN 1.3.1.71-RXN]
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* Gene: [[SJ13098]]
{{#set: taxonomic-range=tax-4751}}
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** Category: [[annotation]]
{{#set: common-name=ergosterol biosynthesis i}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
{{#set: nb reaction found=3}}
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** Category: [[orthology]]
{{#set: completion rate=0.6}}
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
{{#set: nb total reaction=5}}
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* Gene: [[SJ13101]]
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** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ05673]]
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** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ05660]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05674]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13100]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05668]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13095]]
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** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
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== Pathway(s) ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
 +
** '''10''' reactions found over '''24''' reactions in the full pathway
 +
* [[P164-PWY]], purine nucleobases degradation I (anaerobic):
 +
** '''6''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-6596]], adenosine nucleotides degradation I:
 +
** '''7''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6606]], guanosine nucleotides degradation II:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6607]], guanosine nucleotides degradation I:
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6999]], theophylline degradation:
 +
** '''2''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6608]], guanosine nucleotides degradation III:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6538]], caffeine degradation III (bacteria, via demethylation):
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5695]], inosine 5'-phosphate degradation:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II:
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
</div>
 +
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
== External links  ==
 +
* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16672 16672]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R02103 R02103]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/Q62637 Q62637]
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** [http://www.uniprot.org/uniprot/P22811 P22811]
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** [http://www.uniprot.org/uniprot/Q12553 Q12553]
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** [http://www.uniprot.org/uniprot/P08793 P08793]
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** [http://www.uniprot.org/uniprot/P10351 P10351]
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** [http://www.uniprot.org/uniprot/Q7M0I7 Q7M0I7]
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** [http://www.uniprot.org/uniprot/Q7M0I8 Q7M0I8]
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** [http://www.uniprot.org/uniprot/Q7M0I9 Q7M0I9]
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** [http://www.uniprot.org/uniprot/P47990 P47990]
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** [http://www.uniprot.org/uniprot/P47989 P47989]
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** [http://www.uniprot.org/uniprot/Q00519 Q00519]
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{{#set: direction=reversible}}
 +
{{#set: common-name=xanthine:nad+ oxidoreductase}}
 +
{{#set: ec-number=ec-1.17.1.4}}
 +
{{#set: nb gene associated=8}}
 +
{{#set: nb pathway associated=10}}
 +
{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:44, 18 December 2020

Reaction RXN0-901

  • direction:
    • reversible
  • common-name:
    • xanthine:nad+ oxidoreductase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5497, purine nucleobases degradation II (anaerobic):
    • 10 reactions found over 24 reactions in the full pathway
  • P164-PWY, purine nucleobases degradation I (anaerobic):
    • 6 reactions found over 17 reactions in the full pathway
  • PWY-6596, adenosine nucleotides degradation I:
    • 7 reactions found over 8 reactions in the full pathway
  • PWY-6606, guanosine nucleotides degradation II:
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6607, guanosine nucleotides degradation I:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6999, theophylline degradation:
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-6608, guanosine nucleotides degradation III:
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6538, caffeine degradation III (bacteria, via demethylation):
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-5695, inosine 5'-phosphate degradation:
    • 4 reactions found over 4 reactions in the full pathway
  • SALVADEHYPOX-PWY, adenosine nucleotides degradation II:
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links