Difference between revisions of "RXN-13682"

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(Created page with "Category:reaction == Reaction RXN0-901 == * direction: ** reversible * common-name: ** xanthine:nad+ oxidoreductase * ec-number: ** [http://enzyme.expasy.org/EC/1.17.1.4 e...")
(Created page with "Category:reaction == Reaction TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN == * direction: ** left-to-right * common-name: ** trans-octaprenyltranstransferase * ec-number: ** [htt...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN0-901 ==
+
== Reaction TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN ==
 
* direction:
 
* direction:
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
** xanthine:nad+ oxidoreductase
+
** trans-octaprenyltranstransferase
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/1.17.1.4 ec-1.17.1.4]
+
** [http://enzyme.expasy.org/EC/2.5.1.84 ec-2.5.1.84]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[XANTHINE]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[URATE]][c]
+
* 7 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[GERANYL-PP]][c] '''=>''' 7 [[PPI]][c] '''+''' 1 [[SOLANESYL-PYROPHOSPHATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ19255]]
* Gene: [[SJ13098]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
** Category: [[orthology]]
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ13101]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ05673]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ05660]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
* Gene: [[SJ05674]]
+
* Gene: [[SJ10418]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
** Category: [[orthology]]
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ13100]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ05668]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ13095]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-5805]], nonaprenyl diphosphate biosynthesis I:
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
+
** '''1''' reactions found over '''1''' reactions in the full pathway
** '''10''' reactions found over '''24''' reactions in the full pathway
 
* [[P164-PWY]], purine nucleobases degradation I (anaerobic):
 
** '''6''' reactions found over '''17''' reactions in the full pathway
 
* [[PWY-6596]], adenosine nucleotides degradation I:
 
** '''7''' reactions found over '''8''' reactions in the full pathway
 
* [[PWY-6606]], guanosine nucleotides degradation II:
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY-6607]], guanosine nucleotides degradation I:
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY-6999]], theophylline degradation:
 
** '''2''' reactions found over '''9''' reactions in the full pathway
 
* [[PWY-6608]], guanosine nucleotides degradation III:
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY-6538]], caffeine degradation III (bacteria, via demethylation):
 
** '''2''' reactions found over '''7''' reactions in the full pathway
 
* [[PWY-5695]], inosine 5'-phosphate degradation:
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II:
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16672 16672]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11325 11325]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R02103 R02103]
+
** [http://www.genome.jp/dbget-bin/www_bget?R09250 R09250]
* UNIPROT:
+
{{#set: direction=left-to-right}}
** [http://www.uniprot.org/uniprot/Q62637 Q62637]
+
{{#set: common-name=trans-octaprenyltranstransferase}}
** [http://www.uniprot.org/uniprot/P22811 P22811]
+
{{#set: ec-number=ec-2.5.1.84}}
** [http://www.uniprot.org/uniprot/Q12553 Q12553]
+
{{#set: nb gene associated=2}}
** [http://www.uniprot.org/uniprot/P08793 P08793]
+
{{#set: nb pathway associated=1}}
** [http://www.uniprot.org/uniprot/P10351 P10351]
 
** [http://www.uniprot.org/uniprot/Q7M0I7 Q7M0I7]
 
** [http://www.uniprot.org/uniprot/Q7M0I8 Q7M0I8]
 
** [http://www.uniprot.org/uniprot/Q7M0I9 Q7M0I9]
 
** [http://www.uniprot.org/uniprot/P47990 P47990]
 
** [http://www.uniprot.org/uniprot/P47989 P47989]
 
** [http://www.uniprot.org/uniprot/Q00519 Q00519]
 
{{#set: direction=reversible}}
 
{{#set: common-name=xanthine:nad+ oxidoreductase}}
 
{{#set: ec-number=ec-1.17.1.4}}
 
{{#set: nb gene associated=8}}
 
{{#set: nb pathway associated=10}}
 
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:05, 5 January 2021

Reaction TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • trans-octaprenyltranstransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5805, nonaprenyl diphosphate biosynthesis I:
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links