Difference between revisions of "RXN-13698"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction SAMDECARB-RXN == * direction: ** left-to-right * common-name: ** adenosylmethionine decarboxylase * ec-number: ** [http://enzyme.expasy.org/E...")
(Created page with "Category:reaction == Reaction RXN-13698 == * direction: ** reversible * common-name: ** alanine transaminase * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.2 ec-2.6.1....")
 
(6 intermediate revisions by 3 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SAMDECARB-RXN ==
+
== Reaction RXN-13698 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** adenosylmethionine decarboxylase
+
** alanine transaminase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.50 ec-4.1.1.50]
+
** [http://enzyme.expasy.org/EC/2.6.1.2 ec-2.6.1.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PROTON]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINAMINE]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[L-ALPHA-ALANINE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ16226]]
+
* Gene: [[SJ19809]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ07458]]
+
* Gene: [[SJ06815]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I:
+
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type:
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''9''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-6834]], spermidine biosynthesis III:
+
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type:
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''10''' reactions found over '''14''' reactions in the full pathway
−
* [[ARGSPECAT-PWY]], spermine biosynthesis:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: direction=reversible}}
−
* RHEA:
+
{{#set: common-name=alanine transaminase}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15982 15982]
+
{{#set: ec-number=ec-2.6.1.2}}
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00178 R00178]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P82184 P82184]
 
−
** [http://www.uniprot.org/uniprot/P21182 P21182]
 
−
** [http://www.uniprot.org/uniprot/P0A7F6 P0A7F6]
 
−
** [http://www.uniprot.org/uniprot/P17707 P17707]
 
−
** [http://www.uniprot.org/uniprot/P28918 P28918]
 
−
** [http://www.uniprot.org/uniprot/P17708 P17708]
 
−
** [http://www.uniprot.org/uniprot/P50243 P50243]
 
−
** [http://www.uniprot.org/uniprot/P46255 P46255]
 
−
** [http://www.uniprot.org/uniprot/Q04694 Q04694]
 
−
** [http://www.uniprot.org/uniprot/Q42679 Q42679]
 
−
** [http://www.uniprot.org/uniprot/Q42829 Q42829]
 
−
** [http://www.uniprot.org/uniprot/P79888 P79888]
 
−
** [http://www.uniprot.org/uniprot/O04009 O04009]
 
−
** [http://www.uniprot.org/uniprot/O24575 O24575]
 
−
** [http://www.uniprot.org/uniprot/Q43820 Q43820]
 
−
** [http://www.uniprot.org/uniprot/Q39676 Q39676]
 
−
** [http://www.uniprot.org/uniprot/Q39677 Q39677]
 
−
** [http://www.uniprot.org/uniprot/O49972 O49972]
 
−
** [http://www.uniprot.org/uniprot/O65354 O65354]
 
−
** [http://www.uniprot.org/uniprot/O02655 O02655]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=adenosylmethionine decarboxylase}}
 
−
{{#set: ec-number=ec-4.1.1.50}}
 
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction RXN-13698

  • direction:
    • reversible
  • common-name:
    • alanine transaminase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type:
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type:
    • 10 reactions found over 14 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-13698&oldid=141722"