Difference between revisions of "RXN-13712-44-DIMETHYL-824-CHOLESTADIENOL/NADPH/OXYGEN-MOLECULE/PROTON//CPD-4577/NADP/WATER.81."

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(Created page with "Category:reaction == Reaction ACYLCOASYN-RXN == * direction: ** left-to-right * common-name: ** 2,3,4-saturated fatty acyl-coa synthetase ** fatty acyl-coa synthetase ** l...")
(Created page with "Category:reaction == Reaction RXN-16017 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1] == Reaction formula == * 1 ACETYL-C...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ACYLCOASYN-RXN ==
+
== Reaction RXN-16017 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** 2,3,4-saturated fatty acyl-coa synthetase
 
−
** fatty acyl-coa synthetase
 
−
** long-chain fatty acid-coa ligase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
+
** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1]
−
* synonymous:
 
−
** fatty acid thiokinase (long-chain)
 
−
** acyl-activating enzyme
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD66-39]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c]
+
* 1 [[ACETYL-COA]][c] '''+''' 10 [[MALONYL-COA]][c] '''+''' 14 [[NADPH]][c] '''+''' 23 [[PROTON]][c] '''=>''' 10 [[CARBON-DIOXIDE]][c] '''+''' 11 [[CO-A]][c] '''+''' 1 [[CPD-10244]][c] '''+''' 14 [[NADP]][c] '''+''' 9 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* Gene: [[SJ05591]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03650]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08692]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ08690]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ13972]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08691]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7288]], fatty acid &beta;-oxidation VII (yeast peroxisome):
+
* [[PWY-7585]], docosahexaenoate biosynthesis II (bacteria):
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY66-391]], fatty acid &beta;-oxidation VI (mammalian peroxisome):
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[FAO-PWY]], fatty acid &beta;-oxidation I (generic):
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-5136]], fatty acid &beta;-oxidation II (plant peroxisome):
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P18163 P18163]
 
−
** [http://www.uniprot.org/uniprot/P39518 P39518]
 
−
** [http://www.uniprot.org/uniprot/O51162 O51162]
 
−
** [http://www.uniprot.org/uniprot/P39002 P39002]
 
−
** [http://www.uniprot.org/uniprot/Q9RYK3 Q9RYK3]
 
−
** [http://www.uniprot.org/uniprot/Q10776 Q10776]
 
−
** [http://www.uniprot.org/uniprot/O83181 O83181]
 
−
** [http://www.uniprot.org/uniprot/Q9RTR4 Q9RTR4]
 
−
** [http://www.uniprot.org/uniprot/P94547 P94547]
 
−
** [http://www.uniprot.org/uniprot/Q9YCF0 Q9YCF0]
 
−
** [http://www.uniprot.org/uniprot/Q9CHR0 Q9CHR0]
 
−
** [http://www.uniprot.org/uniprot/Q9JTK0 Q9JTK0]
 
−
** [http://www.uniprot.org/uniprot/P44446 P44446]
 
−
** [http://www.uniprot.org/uniprot/O30039 O30039]
 
−
** [http://www.uniprot.org/uniprot/O51539 O51539]
 
−
** [http://www.uniprot.org/uniprot/Q9JYJ7 Q9JYJ7]
 
−
** [http://www.uniprot.org/uniprot/P33121 P33121]
 
−
** [http://www.uniprot.org/uniprot/P33124 P33124]
 
−
** [http://www.uniprot.org/uniprot/P30624 P30624]
 
−
** [http://www.uniprot.org/uniprot/Q02602 Q02602]
 
−
** [http://www.uniprot.org/uniprot/P69451 P69451]
 
−
** [http://www.uniprot.org/uniprot/P69452 P69452]
 
−
** [http://www.uniprot.org/uniprot/Q8JZR0 Q8JZR0]
 
−
** [http://www.uniprot.org/uniprot/P47912 P47912]
 
−
** [http://www.uniprot.org/uniprot/P73004 P73004]
 
−
** [http://www.uniprot.org/uniprot/O81614 O81614]
 
−
** [http://www.uniprot.org/uniprot/O15840 O15840]
 
−
** [http://www.uniprot.org/uniprot/Q96537 Q96537]
 
−
** [http://www.uniprot.org/uniprot/Q96538 Q96538]
 
−
** [http://www.uniprot.org/uniprot/Q96338 Q96338]
 
−
** [http://www.uniprot.org/uniprot/Q9T009 Q9T009]
 
−
** [http://www.uniprot.org/uniprot/Q9T0A0 Q9T0A0]
 
−
** [http://www.uniprot.org/uniprot/Q9ZBW6 Q9ZBW6]
 
−
** [http://www.uniprot.org/uniprot/Q9X7Y5 Q9X7Y5]
 
−
** [http://www.uniprot.org/uniprot/Q9X7Z0 Q9X7Z0]
 
−
** [http://www.uniprot.org/uniprot/O60135 O60135]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=long-chain fatty acid-coa ligase|fatty acyl-coa synthetase|2,3,4-saturated fatty acyl-coa synthetase}}
+
{{#set: ec-number=ec-2.3.1}}
−
{{#set: ec-number=ec-6.2.1.3}}
+
{{#set: nb gene associated=0}}
−
{{#set: synonymous=fatty acid thiokinase (long-chain)|acyl-activating enzyme}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb gene associated=6}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: nb pathway associated=4}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 11:26, 15 January 2021

Reaction RXN-16017

  • direction:
    • left-to-right
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7585, docosahexaenoate biosynthesis II (bacteria):
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-13712-44-DIMETHYL-824-CHOLESTADIENOL/NADPH/OXYGEN-MOLECULE/PROTON//CPD-4577/NADP/WATER.81.&oldid=116395"