Difference between revisions of "RXN-14249"

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(Created page with "Category:reaction == Reaction ACETATE--COA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** acetate-coa ligase ** acetyl-coa synthetase (amp-forming) * ec-num...")
(Created page with "Category:reaction == Reaction RXN-13414 == * direction: ** left-to-right == Reaction formula == * 1 NAD[c] '''+''' 1 SPERMIDINE[c] '''=>''' 1 CPD-14378[c] '''+...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction ACETATE--COA-LIGASE-RXN ==
+
== Reaction RXN-13414 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
* common-name:
 
** acetate-coa ligase
 
** acetyl-coa synthetase (amp-forming)
 
* ec-number:
 
** [http://enzyme.expasy.org/EC/6.2.1.1 ec-6.2.1.1]
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[ACET]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[NAD]][c] '''+''' 1 [[SPERMIDINE]][c] '''=>''' 1 [[CPD-14378]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ08601]]
+
* Gene: [[SJ09995]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
* Gene: [[SJ16901]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY66-161]], ethanol degradation III:
+
* [[PWY-5905]], hypusine biosynthesis:
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
* [[PWY-7118]], chitin degradation to ethanol:
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 
* [[PWY66-162]], ethanol degradation IV:
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
* [[PWY0-1313]], acetate conversion to acetyl-CoA:
 
** '''1''' reactions found over '''1''' reactions in the full pathway
 
* [[PWY-6672]], cis-genanyl-CoA degradation:
 
** '''4''' reactions found over '''9''' reactions in the full pathway
 
* [[PWY66-21]], ethanol degradation II:
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R07477 R07477]
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23176 23176]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19908 19908]
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R00235 R00235]
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/P27095 P27095]
 
** [http://www.uniprot.org/uniprot/P31638 P31638]
 
** [http://www.uniprot.org/uniprot/Q12662 Q12662]
 
** [http://www.uniprot.org/uniprot/P28812 P28812]
 
** [http://www.uniprot.org/uniprot/P27550 P27550]
 
** [http://www.uniprot.org/uniprot/O34613 O34613]
 
** [http://www.uniprot.org/uniprot/Q9PMD2 Q9PMD2]
 
** [http://www.uniprot.org/uniprot/P36333 P36333]
 
** [http://www.uniprot.org/uniprot/Q01574 Q01574]
 
** [http://www.uniprot.org/uniprot/P39062 P39062]
 
** [http://www.uniprot.org/uniprot/Q01576 Q01576]
 
** [http://www.uniprot.org/uniprot/P52910 P52910]
 
** [http://www.uniprot.org/uniprot/Q55404 Q55404]
 
** [http://www.uniprot.org/uniprot/P16928 P16928]
 
** [http://www.uniprot.org/uniprot/P16929 P16929]
 
** [http://www.uniprot.org/uniprot/O68040 O68040]
 
** [http://www.uniprot.org/uniprot/P78773 P78773]
 
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=acetyl-coa synthetase (amp-forming)|acetate-coa ligase}}
+
{{#set: nb gene associated=1}}
{{#set: ec-number=ec-6.2.1.1}}
+
{{#set: nb pathway associated=1}}
{{#set: nb gene associated=2}}
 
{{#set: nb pathway associated=6}}
 
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:08, 5 January 2021

Reaction RXN-13414

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5905, hypusine biosynthesis:
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links