Difference between revisions of "RXN-14569"

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(Created page with "Category:reaction == Reaction OXALODECARB-RXN == * direction: ** left-to-right * common-name: ** malate dehydrogenase (decarboxylating) (nad+) ** oxaloacetate decarboxylas...")
(Created page with "Category:reaction == Reaction ExchangeSeed-CPD-315 == * direction: ** reversible == Reaction formula == * 1.0 CPD-315[C-BOUNDARY] '''<=>''' 1.0 CPD-315[e] == Gene(...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction OXALODECARB-RXN ==
+
== Reaction ExchangeSeed-CPD-315 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
−
* common-name:
 
−
** malate dehydrogenase (decarboxylating) (nad+)
 
−
** oxaloacetate decarboxylase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/1.1.1.40 ec-1.1.1.40]
 
−
** [http://enzyme.expasy.org/EC/4.1.1.3 ec-4.1.1.3]
 
−
** [http://enzyme.expasy.org/EC/1.1.1.38 ec-1.1.1.38]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1.0 [[CPD-315]][C-BOUNDARY] '''<=>''' 1.0 [[CPD-315]][e]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ11643]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14191]]
 
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** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13180]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway):
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6339]], syringate degradation:
 
−
** '''2''' reactions found over '''9''' reactions in the full pathway
 
−
* [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation:
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=reversible}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15642 15642]
+
{{#set: nb gene associated=0}}
−
* LIGAND-RXN:
+
{{#set: nb pathway associated=0}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00217 R00217]
+
{{#set: reconstruction category=manual}}
−
* UNIPROT:
+
{{#set: reconstruction tool=curation}}
−
** [http://www.uniprot.org/uniprot/P13187 P13187]
+
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
−
** [http://www.uniprot.org/uniprot/P13155 P13155]
+
{{#set: reconstruction source=import_from_medium}}
−
** [http://www.uniprot.org/uniprot/P13156 P13156]
 
−
** [http://www.uniprot.org/uniprot/Q58628 Q58628]
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=malate dehydrogenase (decarboxylating) (nad+)|oxaloacetate decarboxylase}}
 
−
{{#set: ec-number=ec-1.1.1.40|ec-1.1.1.38|ec-4.1.1.3}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=3}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 15:38, 5 January 2021

Reaction ExchangeSeed-CPD-315

  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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