Difference between revisions of "RXN-15043"

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(Created page with "Category:reaction == Reaction HOMSUCTRAN-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.46 ec-2.3.1.46] == Reaction formula == * 1...")
(Created page with "Category:reaction == Reaction 2.5.1.32-RXN == * direction: ** left-to-right * common-name: ** prephytoene diphosphate synthase * synonymous: ** geranylgeranyl-diphosphate...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction HOMSUCTRAN-RXN ==
+
== Reaction 2.5.1.32-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* ec-number:
+
* common-name:
−
** [http://enzyme.expasy.org/EC/2.3.1.46 ec-2.3.1.46]
+
** prephytoene diphosphate synthase
 +
* synonymous:
 +
** geranylgeranyl-diphosphate geranylgeranyltransferase
 +
** psase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[HOMO-SER]][c] '''+''' 1 [[SUC-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[O-SUCCINYL-L-HOMOSERINE]][c]
+
* 2 [[GERANYLGERANYL-PP]][c] '''=>''' 1 [[CPD-464]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ02885]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I:
+
* [[PWY-7943]], lycopadiene biosynthesis:
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6287]], neurosporene biosynthesis:
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22009 22009]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22297 22297]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01777 R01777]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02065 R02065]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9PLV2 Q9PLV2]
+
** [http://www.uniprot.org/uniprot/P53609 P53609]
−
** [http://www.uniprot.org/uniprot/Q9CEC5 Q9CEC5]
+
** [http://www.uniprot.org/uniprot/P37295 P37295]
−
** [http://www.uniprot.org/uniprot/P07623 P07623]
+
** [http://www.uniprot.org/uniprot/P22872 P22872]
 +
** [http://www.uniprot.org/uniprot/P53610 P53610]
 +
** [http://www.uniprot.org/uniprot/P53612 P53612]
 +
** [http://www.uniprot.org/uniprot/P17056 P17056]
 +
** [http://www.uniprot.org/uniprot/P49293 P49293]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-2.3.1.46}}
+
{{#set: common-name=prephytoene diphosphate synthase}}
−
{{#set: nb gene associated=0}}
+
{{#set: synonymous=geranylgeranyl-diphosphate geranylgeranyltransferase|psase}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb gene associated=1}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:07, 14 January 2021

Reaction 2.5.1.32-RXN

  • direction:
    • left-to-right
  • common-name:
    • prephytoene diphosphate synthase
  • synonymous:
    • geranylgeranyl-diphosphate geranylgeranyltransferase
    • psase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7943, lycopadiene biosynthesis:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6475, trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-6287, neurosporene biosynthesis:
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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