Difference between revisions of "RXN-15043"

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(Created page with "Category:reaction == Reaction TRYPTOPHAN--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** tryptophan-trna ligase * ec-number: ** [http://enzyme.expasy.o...")
(Created page with "Category:reaction == Reaction RXN-7979 == * direction: ** left-to-right * synonymous: ** zea-epoxidase == Reaction formula == * 1 CPD1F-131[c] '''+''' 1 OXYGEN-MOLEC...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TRYPTOPHAN--TRNA-LIGASE-RXN ==
+
== Reaction RXN-7979 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
+
* synonymous:
−
** tryptophan-trna ligase
+
** zea-epoxidase
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/6.1.1.2 ec-6.1.1.2]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[TRP-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-TRP-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[CPD1F-131]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[CPD1F-133]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ20749]]
+
* Gene: [[SJ1973]]
−
** Category: [[annotation]]
+
** Category: [[manual]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[sjap]], Tool: [[unknown-tool]], Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)
−
* Gene: [[SJ21092]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02283]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[PWY-5174]], capsanthin and capsorubin biosynthesis:
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5945]], violaxanthin, antheraxanthin and zeaxanthin interconversion:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[sjap]]; tool: [[curation]]; comment: transformation of antheraxanthin into violaxanthin (first cycle of xanthophylls)
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24081 24081]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14938 14938]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03664 R03664]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07200 R07200]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P23381 P23381]
 
−
** [http://www.uniprot.org/uniprot/Q9ZD76 Q9ZD76]
 
−
** [http://www.uniprot.org/uniprot/O84589 O84589]
 
−
** [http://www.uniprot.org/uniprot/Q9PIB4 Q9PIB4]
 
−
** [http://www.uniprot.org/uniprot/Q9CJD1 Q9CJD1]
 
−
** [http://www.uniprot.org/uniprot/P43835 P43835]
 
−
** [http://www.uniprot.org/uniprot/Q9Z7A4 Q9Z7A4]
 
−
** [http://www.uniprot.org/uniprot/Q9WYW2 Q9WYW2]
 
−
** [http://www.uniprot.org/uniprot/O26352 O26352]
 
−
** [http://www.uniprot.org/uniprot/O51038 O51038]
 
−
** [http://www.uniprot.org/uniprot/Q9ZJX4 Q9ZJX4]
 
−
** [http://www.uniprot.org/uniprot/Q9JTQ0 Q9JTQ0]
 
−
** [http://www.uniprot.org/uniprot/Q58810 Q58810]
 
−
** [http://www.uniprot.org/uniprot/O83640 O83640]
 
−
** [http://www.uniprot.org/uniprot/P67590 P67590]
 
−
** [http://www.uniprot.org/uniprot/O67115 O67115]
 
−
** [http://www.uniprot.org/uniprot/P47372 P47372]
 
−
** [http://www.uniprot.org/uniprot/P32921 P32921]
 
−
** [http://www.uniprot.org/uniprot/Q12109 Q12109]
 
−
** [http://www.uniprot.org/uniprot/Q49901 Q49901]
 
−
** [http://www.uniprot.org/uniprot/P75510 P75510]
 
−
** [http://www.uniprot.org/uniprot/O42875 O42875]
 
−
** [http://www.uniprot.org/uniprot/O96771 O96771]
 
−
** [http://www.uniprot.org/uniprot/P17248 P17248]
 
−
** [http://www.uniprot.org/uniprot/P21656 P21656]
 
−
** [http://www.uniprot.org/uniprot/P04803 P04803]
 
−
** [http://www.uniprot.org/uniprot/P00954 P00954]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=tryptophan-trna ligase}}
+
{{#set: synonymous=zea-epoxidase}}
−
{{#set: ec-number=ec-6.1.1.2}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb pathway associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction comment=transformation of antheraxanthin into violaxanthin (first cycle of xanthophylls)}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=sjap}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 15:38, 5 January 2021

Reaction RXN-7979

  • direction:
    • left-to-right
  • synonymous:
    • zea-epoxidase

Reaction formula

Gene(s) associated with this reaction

  • Gene: SJ1973
    • Category: manual
      • Source: sjap, Tool: unknown-tool, Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)

Pathway(s)

  • PWY-5174, capsanthin and capsorubin biosynthesis:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5945, violaxanthin, antheraxanthin and zeaxanthin interconversion:
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

  • category: manual; source: sjap; tool: curation; comment: transformation of antheraxanthin into violaxanthin (first cycle of xanthophylls)

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-15043&oldid=77984"