Difference between revisions of "RXN-15067"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXN-12565 == * direction: ** left-to-right * common-name: ** 3-oxohexanoyl-coa thiolase ** acetyl-coa c-acyltransferase * ec-number: ** [http...")
(Created page with "Category:reaction == Reaction OROPRIBTRANS-RXN == * direction: ** reversible * common-name: ** orotate phosphoribosyltransferase * ec-number: ** [http://enzyme.expasy.org/...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-12565 ==
+
== Reaction OROPRIBTRANS-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** 3-oxohexanoyl-coa thiolase
+
** orotate phosphoribosyltransferase
−
** acetyl-coa c-acyltransferase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.16 ec-2.3.1.16]
+
** [http://enzyme.expasy.org/EC/2.4.2.10 ec-2.4.2.10]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACETYL-COA]][c] '''+''' 1 [[BUTYRYL-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[K-HEXANOYL-COA]][c]
+
* 1 [[OROTIDINE-5-PHOSPHATE]][c] '''+''' 1 [[PPI]][c] '''<=>''' 1 [[OROTATE]][c] '''+''' 1 [[PRPP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ02816]]
−
* Gene: [[SJ09371]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21818]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21817]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ14898]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ16470]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered):
+
* [[PWY-7791]], UMP biosynthesis III:
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7790]], UMP biosynthesis II:
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5686]], UMP biosynthesis I:
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31113 31113]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10383 10383]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01177 R01177]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01870 R01870]
−
{{#set: direction=left-to-right}}
+
* UNIPROT:
−
{{#set: common-name=3-oxohexanoyl-coa thiolase|acetyl-coa c-acyltransferase}}
+
** [http://www.uniprot.org/uniprot/P08309 P08309]
−
{{#set: ec-number=ec-2.3.1.16}}
+
** [http://www.uniprot.org/uniprot/P11172 P11172]
−
{{#set: nb gene associated=5}}
+
** [http://www.uniprot.org/uniprot/P18132 P18132]
−
{{#set: nb pathway associated=1}}
+
** [http://www.uniprot.org/uniprot/P77889 P77889]
 +
** [http://www.uniprot.org/uniprot/P0A5U0 P0A5U0]
 +
** [http://www.uniprot.org/uniprot/Q9PIR1 Q9PIR1]
 +
** [http://www.uniprot.org/uniprot/O67742 O67742]
 +
** [http://www.uniprot.org/uniprot/O58855 O58855]
 +
** [http://www.uniprot.org/uniprot/Q9Z7U6 Q9Z7U6]
 +
** [http://www.uniprot.org/uniprot/Q9Y9D8 Q9Y9D8]
 +
** [http://www.uniprot.org/uniprot/P56814 P56814]
 +
** [http://www.uniprot.org/uniprot/Q58509 Q58509]
 +
** [http://www.uniprot.org/uniprot/O28533 O28533]
 +
** [http://www.uniprot.org/uniprot/Q9CGM8 Q9CGM8]
 +
** [http://www.uniprot.org/uniprot/P25972 P25972]
 +
** [http://www.uniprot.org/uniprot/O27888 O27888]
 +
** [http://www.uniprot.org/uniprot/P65915 P65915]
 +
** [http://www.uniprot.org/uniprot/P46534 P46534]
 +
** [http://www.uniprot.org/uniprot/P43855 P43855]
 +
** [http://www.uniprot.org/uniprot/P31754 P31754]
 +
** [http://www.uniprot.org/uniprot/P18904 P18904]
 +
** [http://www.uniprot.org/uniprot/Q01637 Q01637]
 +
** [http://www.uniprot.org/uniprot/P09556 P09556]
 +
** [http://www.uniprot.org/uniprot/P21846 P21846]
 +
** [http://www.uniprot.org/uniprot/P35788 P35788]
 +
** [http://www.uniprot.org/uniprot/P08870 P08870]
 +
** [http://www.uniprot.org/uniprot/Q18516 Q18516]
 +
** [http://www.uniprot.org/uniprot/Q45918 Q45918]
 +
** [http://www.uniprot.org/uniprot/Q42586 Q42586]
 +
** [http://www.uniprot.org/uniprot/P41923 P41923]
 +
** [http://www.uniprot.org/uniprot/Q55574 Q55574]
 +
** [http://www.uniprot.org/uniprot/Q42942 Q42942]
 +
** [http://www.uniprot.org/uniprot/O76139 O76139]
 +
** [http://www.uniprot.org/uniprot/O61790 O61790]
 +
** [http://www.uniprot.org/uniprot/Q9X8R7 Q9X8R7]
 +
** [http://www.uniprot.org/uniprot/O94331 O94331]
 +
** [http://www.uniprot.org/uniprot/P30402 P30402]
 +
** [http://www.uniprot.org/uniprot/P13298 P13298]
 +
** [http://www.uniprot.org/uniprot/P0A7E3 P0A7E3]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=orotate phosphoribosyltransferase}}
 +
{{#set: ec-number=ec-2.4.2.10}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:04, 5 January 2021

Reaction OROPRIBTRANS-RXN

  • direction:
    • reversible
  • common-name:
    • orotate phosphoribosyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7791, UMP biosynthesis III:
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7790, UMP biosynthesis II:
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5686, UMP biosynthesis I:
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-15067&oldid=63402"