Difference between revisions of "RXN-15117"

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(Created page with "Category:reaction == Reaction CHORISMATE-SYNTHASE-RXN == * direction: ** left-to-right * common-name: ** chorismate synthase * ec-number: ** [http://enzyme.expasy.org/EC/4...")
(Created page with "Category:reaction == Reaction RIBOFLAVIN-SYN-RXN == * direction: ** left-to-right * common-name: ** riboflavin synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1....")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction CHORISMATE-SYNTHASE-RXN ==
+
== Reaction RIBOFLAVIN-SYN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** chorismate synthase
+
** riboflavin synthase
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/4.2.3.5 ec-4.2.3.5]
+
** [http://enzyme.expasy.org/EC/2.5.1.9 ec-2.5.1.9]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[3-ENOLPYRUVYL-SHIKIMATE-5P]][c] '''=>''' 1 [[CHORISMATE]][c] '''+''' 1 [[Pi]][c]
+
* 2 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c] '''+''' 1 [[RIBOFLAVIN]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ00821]]
+
* Gene: [[SJ11166]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
+
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
** '''6''' reactions found over '''5''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6167]], flavin biosynthesis II (archaea):
 +
** '''5''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6168]], flavin biosynthesis III (fungi):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21021 21021]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20773 20773]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R01714 R01714]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00066 R00066]
 
* UNIPROT:
 
* UNIPROT:
** [http://www.uniprot.org/uniprot/P27793 P27793]
+
** [http://www.uniprot.org/uniprot/P11998 P11998]
** [http://www.uniprot.org/uniprot/P23353 P23353]
+
** [http://www.uniprot.org/uniprot/P16440 P16440]
** [http://www.uniprot.org/uniprot/Q9JT81 Q9JT81]
+
** [http://www.uniprot.org/uniprot/Q9JUA6 Q9JUA6]
** [http://www.uniprot.org/uniprot/Q58575 Q58575]
+
** [http://www.uniprot.org/uniprot/O24854 O24854]
** [http://www.uniprot.org/uniprot/P43875 P43875]
+
** [http://www.uniprot.org/uniprot/O26237 O26237]
** [http://www.uniprot.org/uniprot/Q9PM41 Q9PM41]
+
** [http://www.uniprot.org/uniprot/P66037 P66037]
** [http://www.uniprot.org/uniprot/Q9CET2 Q9CET2]
+
** [http://www.uniprot.org/uniprot/Q9CGU8 Q9CGU8]
** [http://www.uniprot.org/uniprot/P28777 P28777]
+
** [http://www.uniprot.org/uniprot/Q9YDC5 Q9YDC5]
** [http://www.uniprot.org/uniprot/Q42885 Q42885]
+
** [http://www.uniprot.org/uniprot/Q9PN77 Q9PN77]
** [http://www.uniprot.org/uniprot/Q42884 Q42884]
+
** [http://www.uniprot.org/uniprot/Q9CGU6 Q9CGU6]
** [http://www.uniprot.org/uniprot/P16280 P16280]
+
** [http://www.uniprot.org/uniprot/P45273 P45273]
** [http://www.uniprot.org/uniprot/P12008 P12008]
+
** [http://www.uniprot.org/uniprot/Q9PIB9 Q9PIB9]
** [http://www.uniprot.org/uniprot/O74413 O74413]
+
** [http://www.uniprot.org/uniprot/O66529 O66529]
** [http://www.uniprot.org/uniprot/Q12640 Q12640]
+
** [http://www.uniprot.org/uniprot/Q58584 Q58584]
 +
** [http://www.uniprot.org/uniprot/O28856 O28856]
 +
** [http://www.uniprot.org/uniprot/Q01994 Q01994]
 +
** [http://www.uniprot.org/uniprot/P61714 P61714]
 +
** [http://www.uniprot.org/uniprot/P0AFU8 P0AFU8]
 +
** [http://www.uniprot.org/uniprot/P38145 P38145]
 +
** [http://www.uniprot.org/uniprot/Q55532 Q55532]
 +
** [http://www.uniprot.org/uniprot/P73527 P73527]
 +
** [http://www.uniprot.org/uniprot/Q44680 Q44680]
 +
** [http://www.uniprot.org/uniprot/Q44681 Q44681]
 +
** [http://www.uniprot.org/uniprot/P50854 P50854]
 +
** [http://www.uniprot.org/uniprot/P50856 P50856]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=chorismate synthase}}
+
{{#set: common-name=riboflavin synthase}}
{{#set: ec-number=ec-4.2.3.5}}
+
{{#set: ec-number=ec-2.5.1.9}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:04, 14 January 2021

Reaction RIBOFLAVIN-SYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • riboflavin synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants):
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6167, flavin biosynthesis II (archaea):
    • 5 reactions found over 10 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi):
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links