Difference between revisions of "RXN-15513"

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(Created page with "Category:reaction == Reaction GTP-CYCLOHYDRO-II-RXN == * direction: ** left-to-right * common-name: ** gtp cyclohydrolase ** gtp cyclohydrolase ii * ec-number: ** [http://...")
(Created page with "Category:reaction == Reaction RXN-15513 == * direction: ** reversible * common-name: ** phosphoglycerate mutase * ec-number: ** [http://enzyme.expasy.org/EC/5.4.2.11 ec-5....")
 
(One intermediate revision by the same user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GTP-CYCLOHYDRO-II-RXN ==
+
== Reaction RXN-15513 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** gtp cyclohydrolase
+
** phosphoglycerate mutase
−
** gtp cyclohydrolase ii
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.4.25 ec-3.5.4.25]
+
** [http://enzyme.expasy.org/EC/5.4.2.11 ec-5.4.2.11]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GTP]][c] '''+''' 3 [[WATER]][c] '''=>''' 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c] '''+''' 1 [[FORMATE]][c] '''+''' 1 [[PPI]][c] '''+''' 2 [[PROTON]][c]
+
* 1 [[2-PG]][c] '''<=>''' 1 [[G3P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17329]]
+
* Gene: [[SJ13678]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ05001]]
+
* Gene: [[SJ14916]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21685]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ09590]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12497]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ15529]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
+
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate):
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''11''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia):
+
* [[PWY-1622]], formaldehyde assimilation I (serine pathway):
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''6''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-6168]], flavin biosynthesis III (fungi):
+
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose):
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY66-399]], gluconeogenesis III:
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[P122-PWY]], heterolactic fermentation:
 +
** '''16''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate):
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: direction=reversible}}
−
* RHEA:
+
{{#set: common-name=phosphoglycerate mutase}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23705 23705]
+
{{#set: ec-number=ec-5.4.2.11}}
−
* LIGAND-RXN:
+
{{#set: nb gene associated=6}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00425 R00425]
+
{{#set: nb pathway associated=6}}
−
* UNIPROT:
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P0A7I7 P0A7I7]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q9PNU4 Q9PNU4]
 
−
** [http://www.uniprot.org/uniprot/O08315 O08315]
 
−
** [http://www.uniprot.org/uniprot/O66679 O66679]
 
−
** [http://www.uniprot.org/uniprot/Q9PHU4 Q9PHU4]
 
−
** [http://www.uniprot.org/uniprot/O25484 O25484]
 
−
** [http://www.uniprot.org/uniprot/P0A5V0 P0A5V0]
 
−
** [http://www.uniprot.org/uniprot/P0A7I8 P0A7I8]
 
−
** [http://www.uniprot.org/uniprot/P43525 P43525]
 
−
** [http://www.uniprot.org/uniprot/P17620 P17620]
 
−
** [http://www.uniprot.org/uniprot/P38066 P38066]
 
−
** [http://www.uniprot.org/uniprot/P50139 P50139]
 
−
** [http://www.uniprot.org/uniprot/P74104 P74104]
 
−
** [http://www.uniprot.org/uniprot/O24019 O24019]
 
−
** [http://www.uniprot.org/uniprot/P51695 P51695]
 
−
** [http://www.uniprot.org/uniprot/P50855 P50855]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=gtp cyclohydrolase ii|gtp cyclohydrolase}}
 
−
{{#set: ec-number=ec-3.5.4.25}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=3}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction RXN-15513

  • direction:
    • reversible
  • common-name:
    • phosphoglycerate mutase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate):
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-1622, formaldehyde assimilation I (serine pathway):
    • 6 reactions found over 13 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY, glycolysis III (from glucose):
    • 10 reactions found over 11 reactions in the full pathway
  • PWY66-399, gluconeogenesis III:
    • 11 reactions found over 12 reactions in the full pathway
  • P122-PWY, heterolactic fermentation:
    • 16 reactions found over 18 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate):
    • 10 reactions found over 11 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-15513&oldid=142294"