Difference between revisions of "RXN-16998"
Jump to navigation
Jump to search
(Created page with "Category:reaction == Reaction RXN66-146 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.14.1 ec-1.14.14.1] == Reaction formula == * 1 ...") |
(Created page with "Category:reaction == Reaction LUMAZINESYN-RXN == * direction: ** left-to-right * common-name: ** 6,7-dimethyl-8-ribityllumazine synthase * ec-number: ** [http://enzyme.exp...") |
||
| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction | + | == Reaction LUMAZINESYN-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
| + | * common-name: | ||
| + | ** 6,7-dimethyl-8-ribityllumazine synthase | ||
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.5.1.78 ec-2.5.1.78] |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c] '''+''' 1 [[DIHYDROXY-BUTANONE-P]][c] '''=>''' 1 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 2 [[WATER]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ04442]] |
| − | ** Category: [[ | + | ** Category: [[annotation]] |
| − | *** Source: [[ | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
| − | |||
| − | |||
| − | |||
| − | |||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| − | * [[ | + | * [[PWY-6167]], flavin biosynthesis II (archaea): |
| − | ** ''' | + | ** '''5''' reactions found over '''10''' reactions in the full pathway |
| + | * [[PWY-6168]], flavin biosynthesis III (fungi): | ||
| + | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): | ||
| + | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
| + | * LIGAND-RXN: | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R04457 R04457] | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26152 26152] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
| − | {{#set: ec-number=ec- | + | {{#set: common-name=6,7-dimethyl-8-ribityllumazine synthase}} |
| − | {{#set: nb gene associated= | + | {{#set: ec-number=ec-2.5.1.78}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb gene associated=1}} |
| − | {{#set: reconstruction category=orthology}} | + | {{#set: nb pathway associated=3}} |
| − | {{#set: reconstruction tool=pantograph}} | + | {{#set: reconstruction category=annotation|orthology}} |
| + | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:37, 5 January 2021
Contents
Reaction LUMAZINESYN-RXN
- direction:
- left-to-right
- common-name:
- 6,7-dimethyl-8-ribityllumazine synthase
- ec-number:
Reaction formula
- 1 AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE[c] + 1 DIHYDROXY-BUTANONE-P[c] => 1 DIMETHYL-D-RIBITYL-LUMAZINE[c] + 1 PROTON[c] + 1 Pi[c] + 2 WATER[c]
Gene(s) associated with this reaction
- Gene: SJ04442
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6167, flavin biosynthesis II (archaea):
- 5 reactions found over 10 reactions in the full pathway
- PWY-6168, flavin biosynthesis III (fungi):
- 7 reactions found over 9 reactions in the full pathway
- RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants):
- 8 reactions found over 9 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
