Difference between revisions of "RXN-17023"

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(Created page with "Category:reaction == Reaction MERCAPYSTRANS-RXN == * direction: ** left-to-right * common-name: ** 3-mercaptopyruvate:cyanide sulfurtransferase * ec-number: ** [http://enz...")
(Created page with "Category:reaction == Reaction HOMSUCTRAN-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.46 ec-2.3.1.46] == Reaction formula == * 1...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction MERCAPYSTRANS-RXN ==
+
== Reaction HOMSUCTRAN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
* common-name:
 
** 3-mercaptopyruvate:cyanide sulfurtransferase
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/2.8.1.2 ec-2.8.1.2]
+
** [http://enzyme.expasy.org/EC/2.3.1.46 ec-2.3.1.46]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[3-MERCAPTO-PYRUVATE]][c] '''+''' 1 [[Red-Thioredoxin]][c] '''=>''' 1 [[HS]][c] '''+''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[HOMO-SER]][c] '''+''' 1 [[SUC-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[O-SUCCINYL-L-HOMOSERINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ16682]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ00307]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-5329]], L-cysteine degradation III:
+
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I:
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21741 21741]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22009 22009]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R03106 R03106]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01777 R01777]
 
* UNIPROT:
 
* UNIPROT:
** [http://www.uniprot.org/uniprot/Q9USJ1 Q9USJ1]
+
** [http://www.uniprot.org/uniprot/Q9PLV2 Q9PLV2]
 +
** [http://www.uniprot.org/uniprot/Q9CEC5 Q9CEC5]
 +
** [http://www.uniprot.org/uniprot/P07623 P07623]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=3-mercaptopyruvate:cyanide sulfurtransferase}}
+
{{#set: ec-number=ec-2.3.1.46}}
{{#set: ec-number=ec-2.8.1.2}}
+
{{#set: nb gene associated=0}}
{{#set: nb gene associated=2}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=gap-filling}}
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=meneco}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=added for gapfilling}}
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}

Revision as of 19:07, 14 January 2021

Reaction HOMSUCTRAN-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • HOMOSER-METSYN-PWY, L-methionine biosynthesis I:
    • 4 reactions found over 7 reactions in the full pathway

Reconstruction information

External links