Difference between revisions of "RXN-17121"

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(Created page with "Category:reaction == Reaction 2-ISOPROPYLMALATESYN-RXN == * direction: ** left-to-right * common-name: ** 2-isopropylmalate synthase * ec-number: ** [http://enzyme.expasy....")
(Created page with "Category:reaction == Reaction RXN66-318 == * direction: ** left-to-right * common-name: ** 4α-carboxy-5α-cholesta-8,24-dien-3β-ol:nad(p)+ 3-dehydrogenase...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2-ISOPROPYLMALATESYN-RXN ==
+
== Reaction RXN66-318 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 2-isopropylmalate synthase
+
** 4α-carboxy-5α-cholesta-8,24-dien-3β-ol:nad(p)+ 3-dehydrogenase (decarboxylating)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.3.13 ec-2.3.3.13]
+
** [http://enzyme.expasy.org/EC/1.1.1.170 ec-1.1.1.170]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[ACETYL-COA]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CPD-4702]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-4581]][c] '''+''' 1 [[NADH-P-OR-NOP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ04717]]
+
* Gene: [[SJ04782]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[LEUSYN-PWY]], L-leucine biosynthesis:
+
* [[PWY-6074]], zymosterol biosynthesis:
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''6''' reactions found over '''14''' reactions in the full pathway
−
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered):
+
* [[PWY66-4]], cholesterol biosynthesis III (via desmosterol):
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''14''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY66-341]], cholesterol biosynthesis I:
 +
** '''14''' reactions found over '''18''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21525 21525]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01213 R01213]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P06208 P06208]
 
−
** [http://www.uniprot.org/uniprot/Q58595 Q58595]
 
−
** [http://www.uniprot.org/uniprot/P09151 P09151]
 
−
** [http://www.uniprot.org/uniprot/Q9PLV9 Q9PLV9]
 
−
** [http://www.uniprot.org/uniprot/Q9JUK6 Q9JUK6]
 
−
** [http://www.uniprot.org/uniprot/Q58787 Q58787]
 
−
** [http://www.uniprot.org/uniprot/P94565 P94565]
 
−
** [http://www.uniprot.org/uniprot/Q9JP75 Q9JP75]
 
−
** [http://www.uniprot.org/uniprot/Q02141 Q02141]
 
−
** [http://www.uniprot.org/uniprot/P48575 P48575]
 
−
** [http://www.uniprot.org/uniprot/O86511 O86511]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=2-isopropylmalate synthase}}
+
{{#set: common-name=4α-carboxy-5α-cholesta-8,24-dien-3β-ol:nad(p)+ 3-dehydrogenase (decarboxylating)}}
−
{{#set: ec-number=ec-2.3.3.13}}
+
{{#set: ec-number=ec-1.1.1.170}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 13:16, 14 January 2021

Reaction RXN66-318

  • direction:
    • left-to-right
  • common-name:
    • 4α-carboxy-5α-cholesta-8,24-dien-3β-ol:nad(p)+ 3-dehydrogenase (decarboxylating)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6074, zymosterol biosynthesis:
    • 6 reactions found over 14 reactions in the full pathway
  • PWY66-4, cholesterol biosynthesis III (via desmosterol):
    • 14 reactions found over 4 reactions in the full pathway
  • PWY66-341, cholesterol biosynthesis I:
    • 14 reactions found over 18 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-17121&oldid=89450"