Difference between revisions of "RXN-17779"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=URACIL-PRIBOSYLTRANS-RXN URACIL-PRIBOSYLTRANS-RXN] == * direction: ** left-to-right * common-name:...")
(Created page with "Category:reaction == Reaction 2.8.2.23-RXN == * direction: ** left-to-right * common-name: ** [heparan sulfate]-glucosamine 3-sulfotransferase 1 ** [heparan sulfate]-&alph...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=URACIL-PRIBOSYLTRANS-RXN URACIL-PRIBOSYLTRANS-RXN] ==
+
== Reaction 2.8.2.23-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** uracil phosphoribosyltransferase
+
** [heparan sulfate]-glucosamine 3-sulfotransferase 1
 +
** [heparan sulfate]-α-d-n-sulfoglucosamine 3-o-sulfotransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.2.9 ec-2.4.2.9]
+
** [http://enzyme.expasy.org/EC/2.8.2.23 ec-2.8.2.23]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PRPP]][c] '''+''' 1 [[URACIL]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[UMP]][c]
+
* 1 [[Heparan-sulfate-D-GlcNS]][c] '''+''' 1 [[PAPS]][c] '''=>''' 1 [[3-5-ADP]][c] '''+''' 1 [[Heparan-sulfate-3-N-disulfate]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18806]]
+
* Gene: [[SJ00944]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ17721]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21424]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08012]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ20108]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ11023]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ02034]]
+
* Gene: [[SJ07694]]
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ16689]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7183]], pyrimidine nucleobases salvage I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7183 PWY-7183]
+
* [[PWY-6558]], heparan sulfate biosynthesis (late stages):
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''7''' reactions found over '''13''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13017 13017]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15462 15462]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00966 R00966]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P0A8F0 P0A8F0]
 
−
** [http://www.uniprot.org/uniprot/P39765 P39765]
 
−
** [http://www.uniprot.org/uniprot/Q9CEC9 Q9CEC9]
 
−
** [http://www.uniprot.org/uniprot/P47276 P47276]
 
−
** [http://www.uniprot.org/uniprot/O27186 O27186]
 
−
** [http://www.uniprot.org/uniprot/P43857 P43857]
 
−
** [http://www.uniprot.org/uniprot/O67914 O67914]
 
−
** [http://www.uniprot.org/uniprot/P44722 P44722]
 
−
** [http://www.uniprot.org/uniprot/Q9PN13 Q9PN13]
 
−
** [http://www.uniprot.org/uniprot/P65941 P65941]
 
−
** [http://www.uniprot.org/uniprot/P39149 P39149]
 
−
** [http://www.uniprot.org/uniprot/P18562 P18562]
 
−
** [http://www.uniprot.org/uniprot/P41007 P41007]
 
−
** [http://www.uniprot.org/uniprot/P72753 P72753]
 
−
** [http://www.uniprot.org/uniprot/Q55758 Q55758]
 
−
** [http://www.uniprot.org/uniprot/P93394 P93394]
 
−
** [http://www.uniprot.org/uniprot/O65583 O65583]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=uracil phosphoribosyltransferase}}
+
{{#set: common-name=[heparan sulfate]-&alpha;-d-n-sulfoglucosamine 3-o-sulfotransferase|[heparan sulfate]-glucosamine 3-sulfotransferase 1}}
−
{{#set: ec-number=ec-2.4.2.9}}
+
{{#set: ec-number=ec-2.8.2.23}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=6}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 20:38, 18 December 2020

Reaction 2.8.2.23-RXN

  • direction:
    • left-to-right
  • common-name:
    • [heparan sulfate]-glucosamine 3-sulfotransferase 1
    • [heparan sulfate]-α-d-n-sulfoglucosamine 3-o-sulfotransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6558, heparan sulfate biosynthesis (late stages):
    • 7 reactions found over 13 reactions in the full pathway

Reconstruction information

External links

  • Property "Common-name" (as page type) with input value "heparan sulfate]-α-d-n-sulfoglucosamine 3-o-sulfotransferase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Common-name" (as page type) with input value "heparan sulfate]-glucosamine 3-sulfotransferase 1" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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