Difference between revisions of "RXN-17791"

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(Created page with "Category:reaction == Reaction ARG-OXIDATION-RXN == * direction: ** left-to-right * common-name: ** l-amino-acid oxidase * ec-number: ** [http://enzyme.expasy.org/EC/1.4.3....")
(Created page with "Category:reaction == Reaction METHYLCROTONYL-COA-CARBOXYLASE-RXN == * direction: ** left-to-right * common-name: ** 3-methylcrotonyl-coa carboxylase * ec-number: ** [http:...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ARG-OXIDATION-RXN ==
+
== Reaction METHYLCROTONYL-COA-CARBOXYLASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** l-amino-acid oxidase
+
** 3-methylcrotonyl-coa carboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.4.3.25 ec-1.4.3.25]
+
** [http://enzyme.expasy.org/EC/6.4.1.4 ec-6.4.1.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ARG]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-824]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
+
* 1 [[3-METHYL-CROTONYL-COA]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[TRANS-3-METHYL-GLUTACONYL-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19480]]
+
* Gene: [[SJ12008]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ00445]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08104]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ19835]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02214]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[ARGDEG-IV-PWY]], L-arginine degradation VIII (arginine oxidase pathway):
+
* [[LEU-DEG2-PWY]], L-leucine degradation I:
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''4''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=51405 51405]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13590 13590]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04138 R04138]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q40121 Q40121]
 +
** [http://www.uniprot.org/uniprot/Q42777 Q42777]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=l-amino-acid oxidase}}
+
{{#set: common-name=3-methylcrotonyl-coa carboxylase}}
−
{{#set: ec-number=ec-1.4.3.25}}
+
{{#set: ec-number=ec-6.4.1.4}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=4}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:37, 5 January 2021

Reaction METHYLCROTONYL-COA-CARBOXYLASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • 3-methylcrotonyl-coa carboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • LEU-DEG2-PWY, L-leucine degradation I:
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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