Difference between revisions of "RXN-17792"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALANINE--TRNA-LIGASE-RXN ALANINE--TRNA-LIGASE-RXN] == * direction: ** left-to-right * common-name:...")
(Created page with "Category:reaction == Reaction RXN-11210 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/3.5.1.6 ec-3.5.1.6] == Reaction formula == * 1 3-UR...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALANINE--TRNA-LIGASE-RXN ALANINE--TRNA-LIGASE-RXN] ==
+
== Reaction RXN-11210 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** alanine-trna ligase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.7 ec-6.1.1.7]
+
** [http://enzyme.expasy.org/EC/3.5.1.6 ec-3.5.1.6]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ALA-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[L-ALPHA-ALANINE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ALA-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[3-UREIDO-ISOBUTYRATE]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-471]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05317]]
+
* Gene: [[SJ06121]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09204]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02907]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[PWY-6430]], thymine degradation:
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12541 12541]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=37340 37340]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03038 R03038]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P56452 P56452]
 
−
** [http://www.uniprot.org/uniprot/O27718 O27718]
 
−
** [http://www.uniprot.org/uniprot/O34526 O34526]
 
−
** [http://www.uniprot.org/uniprot/P47534 P47534]
 
−
** [http://www.uniprot.org/uniprot/O58035 O58035]
 
−
** [http://www.uniprot.org/uniprot/Q9PI05 Q9PI05]
 
−
** [http://www.uniprot.org/uniprot/Q9JTG4 Q9JTG4]
 
−
** [http://www.uniprot.org/uniprot/Q57984 Q57984]
 
−
** [http://www.uniprot.org/uniprot/O51238 O51238]
 
−
** [http://www.uniprot.org/uniprot/Q9CEW0 Q9CEW0]
 
−
** [http://www.uniprot.org/uniprot/O83980 O83980]
 
−
** [http://www.uniprot.org/uniprot/Q9X1B6 Q9X1B6]
 
−
** [http://www.uniprot.org/uniprot/Q9ZJY5 Q9ZJY5]
 
−
** [http://www.uniprot.org/uniprot/O67323 O67323]
 
−
** [http://www.uniprot.org/uniprot/Q9ZCA4 Q9ZCA4]
 
−
** [http://www.uniprot.org/uniprot/Q9Z714 Q9Z714]
 
−
** [http://www.uniprot.org/uniprot/P49588 P49588]
 
−
** [http://www.uniprot.org/uniprot/P43815 P43815]
 
−
** [http://www.uniprot.org/uniprot/P50475 P50475]
 
−
** [http://www.uniprot.org/uniprot/P24075 P24075]
 
−
** [http://www.uniprot.org/uniprot/P27866 P27866]
 
−
** [http://www.uniprot.org/uniprot/P35029 P35029]
 
−
** [http://www.uniprot.org/uniprot/P40825 P40825]
 
−
** [http://www.uniprot.org/uniprot/P75368 P75368]
 
−
** [http://www.uniprot.org/uniprot/Q48976 Q48976]
 
−
** [http://www.uniprot.org/uniprot/P00957 P00957]
 
−
** [http://www.uniprot.org/uniprot/P21894 P21894]
 
−
** [http://www.uniprot.org/uniprot/O50189 O50189]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=alanine-trna ligase}}
+
{{#set: ec-number=ec-3.5.1.6}}
−
{{#set: ec-number=ec-6.1.1.7}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=3}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:40, 18 December 2020

Reaction RXN-11210

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6430, thymine degradation:
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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