Difference between revisions of "RXN-21830"

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(Created page with "Category:reaction == Reaction HOMOCYSMETB12-RXN == * direction: ** left-to-right * common-name: ** methionine synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1.1...")
(Created page with "Category:reaction == Reaction RXN0-2301 == * direction: ** left-to-right * common-name: ** isovaleryl-coa dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.3.8....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction HOMOCYSMETB12-RXN ==
+
== Reaction RXN0-2301 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** methionine synthase
+
** isovaleryl-coa dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.1.13 ec-2.1.1.13]
+
** [http://enzyme.expasy.org/EC/1.3.8.4 ec-1.3.8.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[5-METHYL-THF-GLU-N]][c] '''+''' 1 [[HOMO-CYS]][c] '''=>''' 1 [[MET]][c] '''+''' 1 [[THF-GLU-N]][c]
+
* 1 [[ETF-Oxidized]][c] '''+''' 1 [[ISOVALERYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-METHYL-CROTONYL-COA]][c] '''+''' 1 [[ETF-Reduced]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03226]]
+
* Gene: [[SJ07241]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 16: Line 16:
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I:
+
* [[LEU-DEG2-PWY]], L-leucine degradation I:
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
** '''4''' reactions found over '''6''' reactions in the full pathway
−
* [[HSERMETANA-PWY]], L-methionine biosynthesis III:
 
−
** '''3''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-3841]], folate transformations II (plants):
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[1CMET2-PWY]], folate transformations III (E. coli):
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[ADENOSYLHOMOCYSCAT-PWY]], L-methionine salvage from L-homocysteine:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-2201]], folate transformations I:
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11173 11173]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12277 12277]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00946 R00946]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04096 R04096]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q57195 Q57195]
 
−
** [http://www.uniprot.org/uniprot/Q9RVQ6 Q9RVQ6]
 
−
** [http://www.uniprot.org/uniprot/O33259 O33259]
 
−
** [http://www.uniprot.org/uniprot/Q55786 Q55786]
 
−
** [http://www.uniprot.org/uniprot/Q09582 Q09582]
 
−
** [http://www.uniprot.org/uniprot/Q9Z2Q4 Q9Z2Q4]
 
−
** [http://www.uniprot.org/uniprot/P13009 P13009]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=methionine synthase}}
+
{{#set: common-name=isovaleryl-coa dehydrogenase}}
−
{{#set: ec-number=ec-2.1.1.13}}
+
{{#set: ec-number=ec-1.3.8.4}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:00, 5 January 2021

Reaction RXN0-2301

  • direction:
    • left-to-right
  • common-name:
    • isovaleryl-coa dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • LEU-DEG2-PWY, L-leucine degradation I:
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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