Difference between revisions of "RXN-2541"

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(Created page with "Category:reaction == Reaction 2.1.1.5-RXN == * direction: ** left-to-right * common-name: ** betaine-homocysteine s-methyltransferase * ec-number: ** [http://enzyme.expasy...")
(Created page with "Category:reaction == Reaction RXN-2541 == * direction: ** left-to-right * common-name: ** homogentisate phytyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.5....")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction 2.1.1.5-RXN ==
+
== Reaction RXN-2541 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** betaine-homocysteine s-methyltransferase
+
** homogentisate phytyltransferase
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/2.1.1.5 ec-2.1.1.5]
+
** [http://enzyme.expasy.org/EC/2.5.1.115 ec-2.5.1.115]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[BETAINE]][c] '''+''' 1 [[HOMO-CYS]][c] '''=>''' 1 [[DIMETHYL-GLYCINE]][c] '''+''' 1 [[MET]][c]
+
* 1 [[HOMOGENTISATE]][c] '''+''' 1 [[PHYTYL-PYROPHOSPHATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[MPBQ]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ07112]]
+
* Gene: [[SJ01234]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-3661]], glycine betaine degradation I:
+
* [[PWY-1422]], vitamin E biosynthesis (tocopherols):
** '''3''' reactions found over '''7''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
* [[PWY-3661-1]], glycine betaine degradation II (mammalian):
 
** '''2''' reactions found over '''4''' reactions in the full pathway
 
* [[ADENOSYLHOMOCYSCAT-PWY]], L-methionine salvage from L-homocysteine:
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR100629
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22337 22337]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=37976 37976]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R02821 R02821]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07500 R07500]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=betaine-homocysteine s-methyltransferase}}
+
{{#set: common-name=homogentisate phytyltransferase}}
{{#set: ec-number=ec-2.1.1.5}}
+
{{#set: ec-number=ec-2.5.1.115}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=1}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction RXN-2541

  • direction:
    • left-to-right
  • common-name:
    • homogentisate phytyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-1422, vitamin E biosynthesis (tocopherols):
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR100629
  • RHEA:
  • LIGAND-RXN: