Difference between revisions of "RXN-2541"
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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7645 PWY-7645] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2] *...") |
(Created page with "Category:reaction == Reaction RXN-2541 == * direction: ** left-to-right * common-name: ** homogentisate phytyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.5....") |
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| − | [[Category: | + | [[Category:reaction]] |
| − | == | + | == Reaction RXN-2541 == |
| − | * | + | * direction: |
| − | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
| − | ** | + | ** homogentisate phytyltransferase |
| − | == Reaction(s) | + | * ec-number: |
| − | * [[ | + | ** [http://enzyme.expasy.org/EC/2.5.1.115 ec-2.5.1.115] |
| − | == | + | == Reaction formula == |
| − | * [http:// | + | * 1 [[HOMOGENTISATE]][c] '''+''' 1 [[PHYTYL-PYROPHOSPHATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[MPBQ]][c] '''+''' 1 [[PPI]][c] |
| − | {{#set: | + | == Gene(s) associated with this reaction == |
| − | {{#set: common-name= | + | * Gene: [[SJ01234]] |
| − | {{#set: nb | + | ** Category: [[annotation]] |
| − | {{#set: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
| − | {{#set: | + | ** Category: [[orthology]] |
| + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | == Pathway(s) == | ||
| + | * [[PWY-1422]], vitamin E biosynthesis (tocopherols): | ||
| + | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
| + | == Reconstruction information == | ||
| + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
| + | == External links == | ||
| + | * METANETX-RXN : MNXR100629 | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=37976 37976] | ||
| + | * LIGAND-RXN: | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R07500 R07500] | ||
| + | {{#set: direction=left-to-right}} | ||
| + | {{#set: common-name=homogentisate phytyltransferase}} | ||
| + | {{#set: ec-number=ec-2.5.1.115}} | ||
| + | {{#set: nb gene associated=1}} | ||
| + | {{#set: nb pathway associated=1}} | ||
| + | {{#set: reconstruction category=orthology|annotation}} | ||
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
| + | {{#set: reconstruction comment=n.a}} | ||
| + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}} | ||
Latest revision as of 11:24, 18 March 2021
Contents
Reaction RXN-2541
- direction:
- left-to-right
- common-name:
- homogentisate phytyltransferase
- ec-number:
Reaction formula
- 1 HOMOGENTISATE[c] + 1 PHYTYL-PYROPHOSPHATE[c] + 1 PROTON[c] => 1 CARBON-DIOXIDE[c] + 1 MPBQ[c] + 1 PPI[c]
Gene(s) associated with this reaction
- Gene: SJ01234
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-1422, vitamin E biosynthesis (tocopherols):
- 5 reactions found over 7 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links
