Difference between revisions of "RXN-2541"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P281-PWY P281-PWY] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2157 tax-21...")
(Created page with "Category:reaction == Reaction RXN-2541 == * direction: ** left-to-right * common-name: ** homogentisate phytyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.5....")
 
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[[Category:pathway]]
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[[Category:reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P281-PWY P281-PWY] ==
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== Reaction RXN-2541 ==
* taxonomic-range:
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* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2157 tax-2157]
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** left-to-right
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
 
 
* common-name:
 
* common-name:
** 3-phenylpropanoate degradation
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** homogentisate phytyltransferase
== Reaction(s) found ==
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* ec-number:
* [[RXN-2006]]
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** [http://enzyme.expasy.org/EC/2.5.1.115 ec-2.5.1.115]
== Reaction(s) not found ==
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== Reaction formula ==
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2002 RXN-2002]
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* 1 [[HOMOGENTISATE]][c] '''+''' 1 [[PHYTYL-PYROPHOSPHATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[MPBQ]][c] '''+''' 1 [[PPI]][c]
* [http://metacyc.org/META/NEW-IMAGE?object=R244-RXN R244-RXN]
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== Gene(s) associated with this reaction  ==
* [http://metacyc.org/META/NEW-IMAGE?object=R242-RXN R242-RXN]
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* Gene: [[SJ01234]]
* [http://metacyc.org/META/NEW-IMAGE?object=R246-RXN R246-RXN]
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** Category: [[annotation]]
* [http://metacyc.org/META/NEW-IMAGE?object=1.14.13.58-RXN 1.14.13.58-RXN]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* [http://metacyc.org/META/NEW-IMAGE?object=R241-RXN R241-RXN]
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** Category: [[orthology]]
{{#set: taxonomic-range=tax-2157|tax-2}}
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
{{#set: common-name=3-phenylpropanoate degradation}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
{{#set: nb reaction found=1}}
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== Pathway(s)  ==
{{#set: completion rate=0.14}}
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* [[PWY-1422]], vitamin E biosynthesis (tocopherols):
{{#set: nb total reaction=7}}
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** '''5''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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* METANETX-RXN : MNXR100629
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=37976 37976]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R07500 R07500]
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{{#set: direction=left-to-right}}
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{{#set: common-name=homogentisate phytyltransferase}}
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{{#set: ec-number=ec-2.5.1.115}}
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{{#set: nb gene associated=1}}
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{{#set: nb pathway associated=1}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction RXN-2541

  • direction:
    • left-to-right
  • common-name:
    • homogentisate phytyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-1422, vitamin E biosynthesis (tocopherols):
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR100629
  • RHEA:
  • LIGAND-RXN: