Difference between revisions of "RXN-2562"

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(Created page with "Category:reaction == Reaction XANTHOSINEPHOSPHORY-RXN == * direction: ** left-to-right * common-name: ** xanthosine phosphorylase * ec-number: ** [http://enzyme.expasy.org...")
(Created page with "Category:reaction == Reaction GMP-SYN-NH3-RXN == * direction: ** left-to-right * common-name: ** xanthosine-5'-phosphate:ammonia ligase (amp-forming) == Reaction formula =...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction XANTHOSINEPHOSPHORY-RXN ==
+
== Reaction GMP-SYN-NH3-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** xanthosine phosphorylase
+
** xanthosine-5'-phosphate:ammonia ligase (amp-forming)
* ec-number:
 
** [http://enzyme.expasy.org/EC/2.4.2.1 ec-2.4.2.1]
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[Pi]][c] '''+''' 1 [[XANTHOSINE]][c] '''=>''' 1 [[RIBOSE-1P]][c] '''+''' 1 [[XANTHINE]][c]
+
* 1 [[AMMONIUM]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[XANTHOSINE-5-PHOSPHATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[GMP]][c] '''+''' 1 [[PPI]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ03195]]
+
* Gene: [[SJ08788]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ22386]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-5695]], inosine 5'-phosphate degradation:
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY0-1296]], purine ribonucleosides degradation:
 
** '''6''' reactions found over '''6''' reactions in the full pathway
 
* [[SALVPURINE2-PWY]], xanthine and xanthosine salvage:
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27639 27639]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18302 18302]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R02297 R02297]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01230 R01230]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=xanthosine phosphorylase}}
+
{{#set: common-name=xanthosine-5'-phosphate:ammonia ligase (amp-forming)}}
{{#set: ec-number=ec-2.4.2.1}}
+
{{#set: nb gene associated=2}}
{{#set: nb gene associated=1}}
+
{{#set: nb pathway associated=0}}
{{#set: nb pathway associated=3}}
+
{{#set: reconstruction category=annotation|orthology}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:20, 14 January 2021

Reaction GMP-SYN-NH3-RXN

  • direction:
    • left-to-right
  • common-name:
    • xanthosine-5'-phosphate:ammonia ligase (amp-forming)

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links