Difference between revisions of "RXN-6550"

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(Created page with "Category:reaction == Reaction RXN-12461 == * direction: ** left-to-right * common-name: ** trna (carboxymethyluridine34-5-o)-methyltransferase * ec-number: ** [http://enzy...")
(Created page with "Category:reaction == Reaction RXN3O-5304 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1] ** [http://enzyme.expasy.org/EC/2.3....")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-12461 ==
+
== Reaction RXN3O-5304 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
* common-name:
 
** trna (carboxymethyluridine34-5-o)-methyltransferase
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/2.1.1.229 ec-2.1.1.229]
+
** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1]
 +
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[carbo-me-ur-34-tRNA]][c] '''=>''' 1 [[5-2-me-oxy-2-oxo-et-ur-34-tRNA]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c]
+
* 1 [[CO-A]][c] '''+''' 1 [[Stearoyl-ACPs]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[STEAROYL-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ02625]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ16612]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-7888]], tRNA-uridine 2-thiolation (cytoplasmic):
+
* [[PWY3O-355]], stearate biosynthesis III (fungi):
** '''2''' reactions found over '''7''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
* [[PWY-6829]], tRNA methylation (yeast):
 
** '''11''' reactions found over '''15''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
 
== External links  ==
 
== External links  ==
* RHEA:
+
* METANETX-RXN : MNXR123642
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=43209 43209]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=trna (carboxymethyluridine34-5-o)-methyltransferase}}
+
{{#set: ec-number=ec-2.3.1.86|ec-2.3.1}}
{{#set: ec-number=ec-2.1.1.229}}
+
{{#set: nb gene associated=0}}
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=1}}
{{#set: nb pathway associated=2}}
+
{{#set: reconstruction category=gap-filling}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=meneco}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction comment=added for gapfilling}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
{{#set: reconstruction source=saccharina_japonica_genome}}
 

Revision as of 08:36, 15 March 2021

Reaction RXN3O-5304

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY3O-355, stearate biosynthesis III (fungi):
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR123642