Difference between revisions of "RXN-6550"

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(Created page with "Category:reaction == Reaction HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN == * direction: ** left-to-right * common-name: ** hydroxymethylglutaryl-coa lyase * ec-number: ** [http:...")
(Created page with "Category:reaction == Reaction RXN-6550 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.11 ec-1.14.11] == Reaction formula == * 1 2-KET...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN ==
+
== Reaction RXN-6550 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** hydroxymethylglutaryl-coa lyase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.3.4 ec-4.1.3.4]
+
** [http://enzyme.expasy.org/EC/1.14.11 ec-1.14.11]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3-HYDROXY-3-METHYL-GLUTARYL-COA]][c] '''=>''' 1 [[3-KETOBUTYRATE]][c] '''+''' 1 [[ACETYL-COA]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD1F-137]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-6224]][c] '''+''' 1 [[SUC]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21564]]
+
* Gene: [[SJ14675]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07557]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14670]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14672]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08018]]
 +
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[LEU-DEG2-PWY]], L-leucine degradation I:
+
* [[PWY-102]], gibberellin inactivation I (2β-hydroxylation):
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
** '''4''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY66-367]], ketogenesis:
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5074]], mevalonate degradation:
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR110158
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24405 24405]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01360 R01360]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06338 R06338]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P35914 P35914]
 
−
** [http://www.uniprot.org/uniprot/P35915 P35915]
 
−
** [http://www.uniprot.org/uniprot/Q8L7K2 Q8L7K2]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=hydroxymethylglutaryl-coa lyase}}
+
{{#set: ec-number=ec-1.14.11}}
−
{{#set: ec-number=ec-4.1.3.4}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Latest revision as of 11:21, 18 March 2021

Reaction RXN-6550

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-102, gibberellin inactivation I (2β-hydroxylation):
    • 4 reactions found over 11 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR110158
  • LIGAND-RXN:





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