Difference between revisions of "RXN-698"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17252 RXN-17252] == * direction: ** left-to-right * common-name: ** pheophorbide a oxygenase ==...")
(Created page with "Category:reaction == Reaction RXN0-1441 == * direction: ** left-to-right * common-name: ** adp-ribose pyrophosphatase ** adp-ribose diphosphatase * ec-number: ** [http://e...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17252 RXN-17252] ==
+
== Reaction RXN0-1441 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** pheophorbide a oxygenase
+
** adp-ribose pyrophosphatase
 +
** adp-ribose diphosphatase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/3.6.1.53 ec-3.6.1.53]
 +
** [http://enzyme.expasy.org/EC/3.6.1.13 ec-3.6.1.13]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-7061]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[CPD-18666]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[ADENOSINE_DIPHOSPHATE_RIBOSE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[CPD-15317]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ00278]]
+
* Gene: [[SJ00357]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ06120]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ22309]]
+
* Gene: [[SJ08998]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ17313]]
+
* Gene: [[SJ07747]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ22311]]
+
* Gene: [[SJ13701]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ08869]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ07178]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6927]], chlorophyll a degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6927 PWY-6927]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5098]], chlorophyll a degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5098 PWY-5098]
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=48161 48161]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10413 10413]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01054 R01054]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=pheophorbide a oxygenase}}
+
{{#set: common-name=adp-ribose diphosphatase|adp-ribose pyrophosphatase}}
−
{{#set: nb gene associated=6}}
+
{{#set: ec-number=ec-3.6.1.53|ec-3.6.1.13}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb gene associated=5}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:40, 18 December 2020

Reaction RXN0-1441

  • direction:
    • left-to-right
  • common-name:
    • adp-ribose pyrophosphatase
    • adp-ribose diphosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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