Difference between revisions of "RXN-7658"

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(Created page with "Category:reaction == Reaction RXN-12243 == * direction: ** left-to-right * common-name: ** 15-cis-phytoene desaturase ** 15-cis phytoene desaturase * synonymous: ** plant-...")
(Created page with "Category:reaction == Reaction GLUTAMATE-DEHYDROGENASE-RXN == * direction: ** reversible * common-name: ** nad-dependent glutamate dehydrogenase * ec-number: ** [http://enz...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-12243 ==
+
== Reaction GLUTAMATE-DEHYDROGENASE-RXN ==
 
* direction:
 
* direction:
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
** 15-cis-phytoene desaturase
+
** nad-dependent glutamate dehydrogenase
** 15-cis phytoene desaturase
+
* ec-number:
* synonymous:
+
** [http://enzyme.expasy.org/EC/1.4.1.2 ec-1.4.1.2]
** plant-type phytoene desaturase
 
** pds
 
** phytoene desaturase (ambiguous)
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[CPD-12321]][c] '''+''' 1 [[PLASTOQUINONE]][c] '''=>''' 1 [[CPD-13171]][c] '''+''' 1 [[Plastoquinols]][c]
+
* 1 [[GLT]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ08891]]
+
* Gene: [[SJ00250]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20174]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10621]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
+
* [[GLUTAMATE-DEG1-PWY]], L-glutamate degradation I:
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5022]], 4-aminobutanoate degradation V:
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7126]], ethylene biosynthesis IV (engineered):
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle:
 +
** '''11''' reactions found over '''19''' reactions in the full pathway
 +
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate):
 +
** '''7''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30194 30194]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15136 15136]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R09653 R09653]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00243 R00243]
{{#set: direction=left-to-right}}
+
* UNIPROT:
{{#set: common-name=15-cis phytoene desaturase|15-cis-phytoene desaturase}}
+
** [http://www.uniprot.org/uniprot/P20016 P20016]
{{#set: synonymous=pds|plant-type phytoene desaturase|phytoene desaturase (ambiguous)}}
+
** [http://www.uniprot.org/uniprot/P28997 P28997]
{{#set: nb gene associated=1}}
+
** [http://www.uniprot.org/uniprot/P41755 P41755]
{{#set: nb pathway associated=1}}
+
** [http://www.uniprot.org/uniprot/Q9JTP6 Q9JTP6]
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P00365 P00365]
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P93541 P93541]
 +
** [http://www.uniprot.org/uniprot/P80319 P80319]
 +
** [http://www.uniprot.org/uniprot/P24295 P24295]
 +
** [http://www.uniprot.org/uniprot/P27346 P27346]
 +
** [http://www.uniprot.org/uniprot/P33327 P33327]
 +
** [http://www.uniprot.org/uniprot/Q43260 Q43260]
 +
** [http://www.uniprot.org/uniprot/O04937 O04937]
 +
** [http://www.uniprot.org/uniprot/Q25415 Q25415]
 +
** [http://www.uniprot.org/uniprot/O74024 O74024]
 +
** [http://www.uniprot.org/uniprot/O59650 O59650]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=nad-dependent glutamate dehydrogenase}}
 +
{{#set: ec-number=ec-1.4.1.2}}
 +
{{#set: nb gene associated=3}}
 +
{{#set: nb pathway associated=6}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:08, 5 January 2021

Reaction GLUTAMATE-DEHYDROGENASE-RXN

  • direction:
    • reversible
  • common-name:
    • nad-dependent glutamate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLUTAMATE-DEG1-PWY, L-glutamate degradation I:
    • 1 reactions found over 1 reactions in the full pathway
  • ALACAT2-PWY, L-alanine degradation II (to D-lactate):
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5022, 4-aminobutanoate degradation V:
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-7126, ethylene biosynthesis IV (engineered):
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6728, methylaspartate cycle:
    • 11 reactions found over 19 reactions in the full pathway
  • P162-PWY, L-glutamate degradation V (via hydroxyglutarate):
    • 7 reactions found over 11 reactions in the full pathway

Reconstruction information

External links