Difference between revisions of "RXN-7658"

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(Created page with "Category:reaction == Reaction GLUTAMATE-DEHYDROGENASE-RXN == * direction: ** reversible * common-name: ** nad-dependent glutamate dehydrogenase * ec-number: ** [http://enz...")
(Created page with "Category:reaction == Reaction BTUR2-RXN == * direction: ** left-to-right * common-name: ** cobinamide adenosyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.5....")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLUTAMATE-DEHYDROGENASE-RXN ==
+
== Reaction BTUR2-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** nad-dependent glutamate dehydrogenase
+
** cobinamide adenosyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.4.1.2 ec-1.4.1.2]
+
** [http://enzyme.expasy.org/EC/2.5.1.17 ec-2.5.1.17]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GLT]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[COBINAMIDE]][c] '''=>''' 1 [[ADENOSYLCOBINAMIDE]][c] '''+''' 1 [[P3I]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ00250]]
+
* Gene: [[SJ11469]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ20174]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10621]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[GLUTAMATE-DEG1-PWY]], L-glutamate degradation I:
+
* [[COBALSYN-PWY]], superpathway of adenosylcobalamin salvage from cobinamide I:
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''1''' reactions found over '''5''' reactions in the full pathway
−
* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate):
+
* [[PWY-6269]], superpathway of adenosylcobalamin salvage from cobinamide II:
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5022]], 4-aminobutanoate degradation V:
 
−
** '''3''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7126]], ethylene biosynthesis IV (engineered):
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6728]], methylaspartate cycle:
 
−
** '''11''' reactions found over '''19''' reactions in the full pathway
 
−
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate):
 
−
** '''7''' reactions found over '''11''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15136 15136]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14726 14726]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00243 R00243]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07268 R07268]
−
* UNIPROT:
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P20016 P20016]
+
{{#set: common-name=cobinamide adenosyltransferase}}
−
** [http://www.uniprot.org/uniprot/P28997 P28997]
+
{{#set: ec-number=ec-2.5.1.17}}
−
** [http://www.uniprot.org/uniprot/P41755 P41755]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/Q9JTP6 Q9JTP6]
+
{{#set: nb pathway associated=2}}
−
** [http://www.uniprot.org/uniprot/P00365 P00365]
 
−
** [http://www.uniprot.org/uniprot/P93541 P93541]
 
−
** [http://www.uniprot.org/uniprot/P80319 P80319]
 
−
** [http://www.uniprot.org/uniprot/P24295 P24295]
 
−
** [http://www.uniprot.org/uniprot/P27346 P27346]
 
−
** [http://www.uniprot.org/uniprot/P33327 P33327]
 
−
** [http://www.uniprot.org/uniprot/Q43260 Q43260]
 
−
** [http://www.uniprot.org/uniprot/O04937 O04937]
 
−
** [http://www.uniprot.org/uniprot/Q25415 Q25415]
 
−
** [http://www.uniprot.org/uniprot/O74024 O74024]
 
−
** [http://www.uniprot.org/uniprot/O59650 O59650]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=nad-dependent glutamate dehydrogenase}}
 
−
{{#set: ec-number=ec-1.4.1.2}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=6}}
 
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:38, 5 January 2021

Reaction BTUR2-RXN

  • direction:
    • left-to-right
  • common-name:
    • cobinamide adenosyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • COBALSYN-PWY, superpathway of adenosylcobalamin salvage from cobinamide I:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-6269, superpathway of adenosylcobalamin salvage from cobinamide II:
    • 1 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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