Difference between revisions of "RXN-7864"

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(Created page with "Category:reaction == Reaction 3-OXOACYL-ACP-SYNTH-RXN == * direction: ** left-to-right * common-name: ** fatty acid synthase * ec-number: ** [http://enzyme.expasy.org/EC/2...")
(Created page with "Category:reaction == Reaction 3-DEHYDROQUINATE-DEHYDRATASE-RXN == * direction: ** reversible * common-name: ** 3-dehydroquinate dehydratase * ec-number: ** [http://enzyme....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction 3-OXOACYL-ACP-SYNTH-RXN ==
+
== Reaction 3-DEHYDROQUINATE-DEHYDRATASE-RXN ==
 
* direction:
 
* direction:
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
** fatty acid synthase
+
** 3-dehydroquinate dehydratase
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
+
** [http://enzyme.expasy.org/EC/4.2.1.10 ec-4.2.1.10]
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Saturated-Fatty-Acyl-ACPs]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[B-KETOACYL-ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[DEHYDROQUINATE]][c] '''<=>''' 1 [[3-DEHYDRO-SHIKIMATE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ01054]]
* Gene: [[SJ06617]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ04443]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
* Gene: [[SJ06944]]
+
* Gene: [[SJ08386]]
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ00320]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ04769]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ06616]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ19629]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ15983]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
* Gene: [[SJ17743]]
+
* Gene: [[SJ10493]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[SJ18059]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ00613]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ13014]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ10624]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ11672]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ03883]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ00005]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
* Gene: [[SJ15984]]
+
* Gene: [[SJ13450]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[FASYN-ELONG-PWY]], fatty acid elongation -- saturated:
+
* [[PWY-6707]], gallate biosynthesis:
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
 +
** '''6''' reactions found over '''5''' reactions in the full pathway
 +
* [[QUINATEDEG-PWY]], quinate degradation I:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6416]], quinate degradation II:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21099 21099]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03084 R03084]
 
* UNIPROT:
 
* UNIPROT:
** [http://www.uniprot.org/uniprot/P23902 P23902]
+
** [http://www.uniprot.org/uniprot/P05195 P05195]
** [http://www.uniprot.org/uniprot/P0A6R0 P0A6R0]
+
** [http://www.uniprot.org/uniprot/P46380 P46380]
** [http://www.uniprot.org/uniprot/P49327 P49327]
+
** [http://www.uniprot.org/uniprot/Q9CF39 Q9CF39]
** [http://www.uniprot.org/uniprot/P43710 P43710]
+
** [http://www.uniprot.org/uniprot/P07547 P07547]
** [http://www.uniprot.org/uniprot/Q9HYR2 Q9HYR2]
+
** [http://www.uniprot.org/uniprot/P08566 P08566]
** [http://www.uniprot.org/uniprot/O67612 O67612]
+
** [http://www.uniprot.org/uniprot/P43878 P43878]
** [http://www.uniprot.org/uniprot/P20582 P20582]
+
** [http://www.uniprot.org/uniprot/P05194 P05194]
** [http://www.uniprot.org/uniprot/Q9JT63 Q9JT63]
+
** [http://www.uniprot.org/uniprot/Q58849 Q58849]
** [http://www.uniprot.org/uniprot/Q9JW56 Q9JW56]
+
** [http://www.uniprot.org/uniprot/P0A4Z6 P0A4Z6]
** [http://www.uniprot.org/uniprot/Q9PMZ6 Q9PMZ6]
+
** [http://www.uniprot.org/uniprot/Q9PJ53 Q9PJ53]
** [http://www.uniprot.org/uniprot/P43711 P43711]
+
** [http://www.uniprot.org/uniprot/P05147 P05147]
** [http://www.uniprot.org/uniprot/O25284 O25284]
+
** [http://www.uniprot.org/uniprot/P24670 P24670]
** [http://www.uniprot.org/uniprot/Q9JX65 Q9JX65]
+
** [http://www.uniprot.org/uniprot/P35146 P35146]
** [http://www.uniprot.org/uniprot/O34340 O34340]
+
** [http://www.uniprot.org/uniprot/Q42947 Q42947]
** [http://www.uniprot.org/uniprot/Q9PI63 Q9PI63]
+
** [http://www.uniprot.org/uniprot/Q48255 Q48255]
** [http://www.uniprot.org/uniprot/P0AAI5 P0AAI5]
+
** [http://www.uniprot.org/uniprot/P73367 P73367]
** [http://www.uniprot.org/uniprot/Q07510 Q07510]
+
** [http://www.uniprot.org/uniprot/O65917 O65917]
** [http://www.uniprot.org/uniprot/Q06097 Q06097]
 
** [http://www.uniprot.org/uniprot/P41175 P41175]
 
** [http://www.uniprot.org/uniprot/P31176 P31176]
 
** [http://www.uniprot.org/uniprot/Q40027 Q40027]
 
** [http://www.uniprot.org/uniprot/Q40028 Q40028]
 
** [http://www.uniprot.org/uniprot/P73283 P73283]
 
** [http://www.uniprot.org/uniprot/P0A953 P0A953]
 
** [http://www.uniprot.org/uniprot/O64485 O64485]
 
** [http://www.uniprot.org/uniprot/O65677 O65677]
 
** [http://www.uniprot.org/uniprot/Q39310 Q39310]
 
** [http://www.uniprot.org/uniprot/O23738 O23738]
 
** [http://www.uniprot.org/uniprot/Q41134 Q41134]
 
** [http://www.uniprot.org/uniprot/Q41135 Q41135]
 
** [http://www.uniprot.org/uniprot/Q54208 Q54208]
 
** [http://www.uniprot.org/uniprot/O54440 O54440]
 
** [http://www.uniprot.org/uniprot/P55338 P55338]
 
** [http://www.uniprot.org/uniprot/Q9RA31 Q9RA31]
 
** [http://www.uniprot.org/uniprot/P12276 P12276]
 
** [http://www.uniprot.org/uniprot/P12785 P12785]
 
 
</div>
 
</div>
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
{{#set: common-name=fatty acid synthase}}
+
{{#set: common-name=3-dehydroquinate dehydratase}}
{{#set: ec-number=ec-2.3.1.41|ec-2.3.1.179|ec-2.3.1.85|ec-2.3.1.86}}
+
{{#set: ec-number=ec-4.2.1.10}}
{{#set: nb gene associated=17}}
+
{{#set: nb gene associated=4}}
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=4}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:20, 14 January 2021

Reaction 3-DEHYDROQUINATE-DEHYDRATASE-RXN

  • direction:
    • reversible
  • common-name:
    • 3-dehydroquinate dehydratase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6707, gallate biosynthesis:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6163, chorismate biosynthesis from 3-dehydroquinate:
    • 6 reactions found over 5 reactions in the full pathway
  • QUINATEDEG-PWY, quinate degradation I:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6416, quinate degradation II:
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links