Difference between revisions of "RXN-8635"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction 2.5.1.32-RXN == * direction: ** left-to-right * common-name: ** prephytoene diphosphate synthase * synonymous: ** geranylgeranyl-diphosphate...")
(Created page with "Category:reaction == Reaction RXN-14325 == * direction: ** left-to-right == Reaction formula == * 1 AMMONIUM[c] '''+''' 1 ATP[c] '''+''' 1 UTP[c] '''=>''' 1 ...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2.5.1.32-RXN ==
+
== Reaction RXN-14325 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** prephytoene diphosphate synthase
 
−
* synonymous:
 
−
** geranylgeranyl-diphosphate geranylgeranyltransferase
 
−
** psase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[GERANYLGERANYL-PP]][c] '''=>''' 1 [[CPD-464]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[AMMONIUM]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[UTP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CTP]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02885]]
+
* Gene: [[SJ13618]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07094]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7943]], lycopadiene biosynthesis:
 
−
** '''1''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6287]], neurosporene biosynthesis:
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22297 22297]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16598 16598]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R02065 R02065]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P53609 P53609]
 
−
** [http://www.uniprot.org/uniprot/P37295 P37295]
 
−
** [http://www.uniprot.org/uniprot/P22872 P22872]
 
−
** [http://www.uniprot.org/uniprot/P53610 P53610]
 
−
** [http://www.uniprot.org/uniprot/P53612 P53612]
 
−
** [http://www.uniprot.org/uniprot/P17056 P17056]
 
−
** [http://www.uniprot.org/uniprot/P49293 P49293]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=prephytoene diphosphate synthase}}
+
{{#set: nb gene associated=2}}
−
{{#set: synonymous=geranylgeranyl-diphosphate geranylgeranyltransferase|psase}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=3}}
 
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:20, 14 January 2021

Reaction RXN-14325

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-8635&oldid=91019"