Difference between revisions of "RXN-8642"

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(Created page with "Category:reaction == Reaction 3-ISOPROPYLMALDEHYDROG-RXN == * direction: ** reversible * common-name: ** 3-isopropylmalate dehydrogenase * synonymous: ** β-isopropylm...")
(Created page with "Category:reaction == Reaction RXN-17874 == * direction: ** left-to-right * common-name: ** methionine aminopeptidase * ec-number: ** [http://enzyme.expasy.org/EC/3.4.11.18...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3-ISOPROPYLMALDEHYDROG-RXN ==
+
== Reaction RXN-17874 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-isopropylmalate dehydrogenase
+
** methionine aminopeptidase
−
* synonymous:
+
* ec-number:
−
** β-isopropylmalic enzyme
+
** [http://enzyme.expasy.org/EC/3.4.11.18 ec-3.4.11.18]
−
** threo-ds-3-isopropylmalate dehydrogenase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[CPD-7100]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[L-methionyl-L-cysteinyl-Protein]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[MET]][c] '''+''' 1 [[N-terminal-L-cysteine]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21291]]
+
* Gene: [[SJ16932]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ01604]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ18138]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ16573]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ16939]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02903]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[LEUSYN-PWY]], L-leucine biosynthesis:
+
* [[PWY-7800]], Ac/N-end rule pathway:
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''6''' reactions found over '''21''' reactions in the full pathway
−
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered):
+
* [[PWY-7799]], Arg/N-end rule pathway (eukaryotic):
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''7''' reactions found over '''14''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR121226
−
* RHEA:
+
{{#set: direction=left-to-right}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10895 10895]
+
{{#set: common-name=methionine aminopeptidase}}
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-3.4.11.18}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04426 R04426]
+
{{#set: nb gene associated=6}}
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P05644 P05644]
 
−
** [http://www.uniprot.org/uniprot/P05645 P05645]
 
−
** [http://www.uniprot.org/uniprot/Q01987 Q01987]
 
−
** [http://www.uniprot.org/uniprot/Q00412 Q00412]
 
−
** [http://www.uniprot.org/uniprot/P08791 P08791]
 
−
** [http://www.uniprot.org/uniprot/P30125 P30125]
 
−
** [http://www.uniprot.org/uniprot/Q9PLW0 Q9PLW0]
 
−
** [http://www.uniprot.org/uniprot/O66607 O66607]
 
−
** [http://www.uniprot.org/uniprot/P12010 P12010]
 
−
** [http://www.uniprot.org/uniprot/P04173 P04173]
 
−
** [http://www.uniprot.org/uniprot/Q5SIY4 Q5SIY4]
 
−
** [http://www.uniprot.org/uniprot/P24098 P24098]
 
−
** [http://www.uniprot.org/uniprot/Q9JU79 Q9JU79]
 
−
** [http://www.uniprot.org/uniprot/P43860 P43860]
 
−
** [http://www.uniprot.org/uniprot/P41019 P41019]
 
−
** [http://www.uniprot.org/uniprot/P54354 P54354]
 
−
** [http://www.uniprot.org/uniprot/Q56268 Q56268]
 
−
** [http://www.uniprot.org/uniprot/P29102 P29102]
 
−
** [http://www.uniprot.org/uniprot/P37412 P37412]
 
−
** [http://www.uniprot.org/uniprot/P23390 P23390]
 
−
** [http://www.uniprot.org/uniprot/P29696 P29696]
 
−
** [http://www.uniprot.org/uniprot/P41766 P41766]
 
−
** [http://www.uniprot.org/uniprot/Q02143 Q02143]
 
−
** [http://www.uniprot.org/uniprot/P34733 P34733]
 
−
** [http://www.uniprot.org/uniprot/P50180 P50180]
 
−
** [http://www.uniprot.org/uniprot/Q12591 Q12591]
 
−
** [http://www.uniprot.org/uniprot/Q12590 Q12590]
 
−
** [http://www.uniprot.org/uniprot/Q12592 Q12592]
 
−
** [http://www.uniprot.org/uniprot/P07139 P07139]
 
−
** [http://www.uniprot.org/uniprot/P41926 P41926]
 
−
** [http://www.uniprot.org/uniprot/P48012 P48012]
 
−
** [http://www.uniprot.org/uniprot/P87256 P87256]
 
−
** [http://www.uniprot.org/uniprot/P87257 P87257]
 
−
** [http://www.uniprot.org/uniprot/P73960 P73960]
 
−
** [http://www.uniprot.org/uniprot/O86504 O86504]
 
−
** [http://www.uniprot.org/uniprot/O85837 O85837]
 
−
** [http://www.uniprot.org/uniprot/P18869 P18869]
 
−
** [http://www.uniprot.org/uniprot/P34738 P34738]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=3-isopropylmalate dehydrogenase}}
 
−
{{#set: synonymous=threo-ds-3-isopropylmalate dehydrogenase|&beta;-isopropylmalic enzyme}}
 
−
{{#set: nb gene associated=1}}
 
 
{{#set: nb pathway associated=2}}
 
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 08:35, 15 March 2021

Reaction RXN-17874

  • direction:
    • left-to-right
  • common-name:
    • methionine aminopeptidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7800, Ac/N-end rule pathway:
    • 6 reactions found over 21 reactions in the full pathway
  • PWY-7799, Arg/N-end rule pathway (eukaryotic):
    • 7 reactions found over 14 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR121226





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