Difference between revisions of "RXN-8642"

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(Created page with "Category:reaction == Reaction 3-ISOPROPYLMALDEHYDROG-RXN == * direction: ** reversible * common-name: ** 3-isopropylmalate dehydrogenase * synonymous: ** β-isopropylm...")
(Created page with "Category:reaction == Reaction RXN-8642 == <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> * direction: ** reversible * common-name:...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction 3-ISOPROPYLMALDEHYDROG-RXN ==
+
== Reaction RXN-8642 ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
** 3-isopropylmalate dehydrogenase
+
** nadp-dependent isocitrate dehydrogenase
 
* synonymous:
 
* synonymous:
** &beta;-isopropylmalic enzyme
+
** dual-cofactor-specific isocitrate dehydrogenase
** threo-ds-3-isopropylmalate dehydrogenase
+
** idp1
 +
** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
 +
** idp
 +
** oxalsuccinic decarboxylase
 +
** isocitrate dehydrogenase (nadp-dependent)
 +
** nadp-dependent isocitric dehydrogenase
 +
** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
 +
** nadp+-icdh
 +
** idp2
 +
** idp3
 +
** idh (ambiguous)
 +
** nadp-specific isocitrate dehydrogenase
 +
** nadp+-idh
 +
** nadp+-linked isocitrate dehydrogenase
 +
** nadp-linked isocitrate dehydrogenase
 +
** isocitrate (nadp) dehydrogenase
 +
** nadp isocitric dehydrogenase
 +
</div>
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[CPD-7100]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[OXALO-SUCCINATE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ21291]]
+
* Gene: [[SJ08749]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[LEUSYN-PWY]], L-leucine biosynthesis:
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered):
 
** '''5''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR105305
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10895 10895]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19384 19384]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R04426 R04426]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00268 R00268]
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/P05644 P05644]
 
** [http://www.uniprot.org/uniprot/P05645 P05645]
 
** [http://www.uniprot.org/uniprot/Q01987 Q01987]
 
** [http://www.uniprot.org/uniprot/Q00412 Q00412]
 
** [http://www.uniprot.org/uniprot/P08791 P08791]
 
** [http://www.uniprot.org/uniprot/P30125 P30125]
 
** [http://www.uniprot.org/uniprot/Q9PLW0 Q9PLW0]
 
** [http://www.uniprot.org/uniprot/O66607 O66607]
 
** [http://www.uniprot.org/uniprot/P12010 P12010]
 
** [http://www.uniprot.org/uniprot/P04173 P04173]
 
** [http://www.uniprot.org/uniprot/Q5SIY4 Q5SIY4]
 
** [http://www.uniprot.org/uniprot/P24098 P24098]
 
** [http://www.uniprot.org/uniprot/Q9JU79 Q9JU79]
 
** [http://www.uniprot.org/uniprot/P43860 P43860]
 
** [http://www.uniprot.org/uniprot/P41019 P41019]
 
** [http://www.uniprot.org/uniprot/P54354 P54354]
 
** [http://www.uniprot.org/uniprot/Q56268 Q56268]
 
** [http://www.uniprot.org/uniprot/P29102 P29102]
 
** [http://www.uniprot.org/uniprot/P37412 P37412]
 
** [http://www.uniprot.org/uniprot/P23390 P23390]
 
** [http://www.uniprot.org/uniprot/P29696 P29696]
 
** [http://www.uniprot.org/uniprot/P41766 P41766]
 
** [http://www.uniprot.org/uniprot/Q02143 Q02143]
 
** [http://www.uniprot.org/uniprot/P34733 P34733]
 
** [http://www.uniprot.org/uniprot/P50180 P50180]
 
** [http://www.uniprot.org/uniprot/Q12591 Q12591]
 
** [http://www.uniprot.org/uniprot/Q12590 Q12590]
 
** [http://www.uniprot.org/uniprot/Q12592 Q12592]
 
** [http://www.uniprot.org/uniprot/P07139 P07139]
 
** [http://www.uniprot.org/uniprot/P41926 P41926]
 
** [http://www.uniprot.org/uniprot/P48012 P48012]
 
** [http://www.uniprot.org/uniprot/P87256 P87256]
 
** [http://www.uniprot.org/uniprot/P87257 P87257]
 
** [http://www.uniprot.org/uniprot/P73960 P73960]
 
** [http://www.uniprot.org/uniprot/O86504 O86504]
 
** [http://www.uniprot.org/uniprot/O85837 O85837]
 
** [http://www.uniprot.org/uniprot/P18869 P18869]
 
** [http://www.uniprot.org/uniprot/P34738 P34738]
 
</div>
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
{{#set: common-name=3-isopropylmalate dehydrogenase}}
+
{{#set: common-name=nadp-dependent isocitrate dehydrogenase}}
{{#set: synonymous=threo-ds-3-isopropylmalate dehydrogenase|&beta;-isopropylmalic enzyme}}
+
{{#set: synonymous=dual-cofactor-specific isocitrate dehydrogenase|idp2|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|idp|nadp-dependent isocitric dehydrogenase|oxalsuccinic decarboxylase|idh (ambiguous)|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|isocitrate (nadp) dehydrogenase|nadp-linked isocitrate dehydrogenase|nadp+-icdh|nadp+-linked isocitrate dehydrogenase|nadp isocitric dehydrogenase|idp3|nadp+-idh|nadp-specific isocitrate dehydrogenase|isocitrate dehydrogenase (nadp-dependent)|idp1}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=0}}
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction RXN-8642

  • direction:
    • reversible
  • common-name:
    • nadp-dependent isocitrate dehydrogenase
  • synonymous:
    • dual-cofactor-specific isocitrate dehydrogenase
    • idp1
    • triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
    • idp
    • oxalsuccinic decarboxylase
    • isocitrate dehydrogenase (nadp-dependent)
    • nadp-dependent isocitric dehydrogenase
    • isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
    • nadp+-icdh
    • idp2
    • idp3
    • idh (ambiguous)
    • nadp-specific isocitrate dehydrogenase
    • nadp+-idh
    • nadp+-linked isocitrate dehydrogenase
    • nadp-linked isocitrate dehydrogenase
    • isocitrate (nadp) dehydrogenase
    • nadp isocitric dehydrogenase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR105305
  • RHEA:
  • LIGAND-RXN: