Difference between revisions of "RXN-8642"

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(Created page with "Category:reaction == Reaction RXN-16016 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1] == Reaction formula == * 1 ACETYL-C...")
(Created page with "Category:reaction == Reaction RXN-8642 == <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> * direction: ** reversible * common-name:...")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-16016 ==
+
== Reaction RXN-8642 ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* direction:
 
* direction:
−
** left-to-right
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** reversible
−
* ec-number:
+
* common-name:
−
** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1]
+
** nadp-dependent isocitrate dehydrogenase
 +
* synonymous:
 +
** dual-cofactor-specific isocitrate dehydrogenase
 +
** idp1
 +
** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
 +
** idp
 +
** oxalsuccinic decarboxylase
 +
** isocitrate dehydrogenase (nadp-dependent)
 +
** nadp-dependent isocitric dehydrogenase
 +
** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
 +
** nadp+-icdh
 +
** idp2
 +
** idp3
 +
** idh (ambiguous)
 +
** nadp-specific isocitrate dehydrogenase
 +
** nadp+-idh
 +
** nadp+-linked isocitrate dehydrogenase
 +
** nadp-linked isocitrate dehydrogenase
 +
** isocitrate (nadp) dehydrogenase
 +
** nadp isocitric dehydrogenase
 +
</div>
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACETYL-COA]][c] '''+''' 9 [[MALONYL-COA]][c] '''+''' 14 [[NADPH]][c] '''+''' 22 [[PROTON]][c] '''=>''' 1 [[ARACHIDONIC_ACID]][c] '''+''' 9 [[CARBON-DIOXIDE]][c] '''+''' 10 [[CO-A]][c] '''+''' 14 [[NADP]][c] '''+''' 8 [[WATER]][c]
+
* 1 [[OXALO-SUCCINATE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ08749]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7583]], arachidonate biosynthesis II (bacteria):
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
* METANETX-RXN : MNXR105305
−
{{#set: ec-number=ec-2.3.1}}
+
* RHEA:
−
{{#set: nb gene associated=0}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19384 19384]
−
{{#set: nb pathway associated=1}}
+
* LIGAND-RXN:
−
{{#set: reconstruction category=gap-filling}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00268 R00268]
−
{{#set: reconstruction tool=meneco}}
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{{#set: direction=reversible}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: common-name=nadp-dependent isocitrate dehydrogenase}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: synonymous=dual-cofactor-specific isocitrate dehydrogenase|idp2|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|idp|nadp-dependent isocitric dehydrogenase|oxalsuccinic decarboxylase|idh (ambiguous)|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|isocitrate (nadp) dehydrogenase|nadp-linked isocitrate dehydrogenase|nadp+-icdh|nadp+-linked isocitrate dehydrogenase|nadp isocitric dehydrogenase|idp3|nadp+-idh|nadp-specific isocitrate dehydrogenase|isocitrate dehydrogenase (nadp-dependent)|idp1}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=0}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction RXN-8642

  • direction:
    • reversible
  • common-name:
    • nadp-dependent isocitrate dehydrogenase
  • synonymous:
    • dual-cofactor-specific isocitrate dehydrogenase
    • idp1
    • triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
    • idp
    • oxalsuccinic decarboxylase
    • isocitrate dehydrogenase (nadp-dependent)
    • nadp-dependent isocitric dehydrogenase
    • isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
    • nadp+-icdh
    • idp2
    • idp3
    • idh (ambiguous)
    • nadp-specific isocitrate dehydrogenase
    • nadp+-idh
    • nadp+-linked isocitrate dehydrogenase
    • nadp-linked isocitrate dehydrogenase
    • isocitrate (nadp) dehydrogenase
    • nadp isocitric dehydrogenase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR105305
  • RHEA:
  • LIGAND-RXN:





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