Difference between revisions of "RXN-8642"

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(Created page with "Category:reaction == Reaction 2.4.1.151-RXN == * direction: ** left-to-right * common-name: ** galactosyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.4.1.87...")
(Created page with "Category:reaction == Reaction 3-ISOPROPYLMALDEHYDROG-RXN == * direction: ** reversible * common-name: ** 3-isopropylmalate dehydrogenase * synonymous: ** β-isopropylm...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2.4.1.151-RXN ==
+
== Reaction 3-ISOPROPYLMALDEHYDROG-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** galactosyltransferase
+
** 3-isopropylmalate dehydrogenase
−
* ec-number:
+
* synonymous:
−
** [http://enzyme.expasy.org/EC/2.4.1.87 ec-2.4.1.87]
+
** β-isopropylmalic enzyme
 +
** threo-ds-3-isopropylmalate dehydrogenase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[B-Gal-14-NacGlc-R]][c] '''+''' 1 [[CPD-14553]][c] '''=>''' 1 [[ALPHA-D-GALACTOSYL-ETCETERA-GLUCOSAMINYL]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[UDP]][c]
+
* 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[CPD-7100]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ21291]]
−
* Gene: [[SJ18013]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07973]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ13608]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10017]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00988]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ01255]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ12982]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ20305]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13607]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ14527]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ14363]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ00207]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02145]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ07193]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10256]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ11730]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ02446]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7434]], terminal O-glycans residues modification (via type 2 precursor disaccharide):
+
* [[LEUSYN-PWY]], L-leucine biosynthesis:
−
** '''5''' reactions found over '''8''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered):
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13014 13014]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10895 10895]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02791 R02791]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04426 R04426]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q28855 Q28855]
+
** [http://www.uniprot.org/uniprot/P05644 P05644]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/P05645 P05645]
−
{{#set: common-name=galactosyltransferase}}
+
** [http://www.uniprot.org/uniprot/Q01987 Q01987]
−
{{#set: ec-number=ec-2.4.1.87}}
+
** [http://www.uniprot.org/uniprot/Q00412 Q00412]
−
{{#set: nb gene associated=17}}
+
** [http://www.uniprot.org/uniprot/P08791 P08791]
−
{{#set: nb pathway associated=1}}
+
** [http://www.uniprot.org/uniprot/P30125 P30125]
 +
** [http://www.uniprot.org/uniprot/Q9PLW0 Q9PLW0]
 +
** [http://www.uniprot.org/uniprot/O66607 O66607]
 +
** [http://www.uniprot.org/uniprot/P12010 P12010]
 +
** [http://www.uniprot.org/uniprot/P04173 P04173]
 +
** [http://www.uniprot.org/uniprot/Q5SIY4 Q5SIY4]
 +
** [http://www.uniprot.org/uniprot/P24098 P24098]
 +
** [http://www.uniprot.org/uniprot/Q9JU79 Q9JU79]
 +
** [http://www.uniprot.org/uniprot/P43860 P43860]
 +
** [http://www.uniprot.org/uniprot/P41019 P41019]
 +
** [http://www.uniprot.org/uniprot/P54354 P54354]
 +
** [http://www.uniprot.org/uniprot/Q56268 Q56268]
 +
** [http://www.uniprot.org/uniprot/P29102 P29102]
 +
** [http://www.uniprot.org/uniprot/P37412 P37412]
 +
** [http://www.uniprot.org/uniprot/P23390 P23390]
 +
** [http://www.uniprot.org/uniprot/P29696 P29696]
 +
** [http://www.uniprot.org/uniprot/P41766 P41766]
 +
** [http://www.uniprot.org/uniprot/Q02143 Q02143]
 +
** [http://www.uniprot.org/uniprot/P34733 P34733]
 +
** [http://www.uniprot.org/uniprot/P50180 P50180]
 +
** [http://www.uniprot.org/uniprot/Q12591 Q12591]
 +
** [http://www.uniprot.org/uniprot/Q12590 Q12590]
 +
** [http://www.uniprot.org/uniprot/Q12592 Q12592]
 +
** [http://www.uniprot.org/uniprot/P07139 P07139]
 +
** [http://www.uniprot.org/uniprot/P41926 P41926]
 +
** [http://www.uniprot.org/uniprot/P48012 P48012]
 +
** [http://www.uniprot.org/uniprot/P87256 P87256]
 +
** [http://www.uniprot.org/uniprot/P87257 P87257]
 +
** [http://www.uniprot.org/uniprot/P73960 P73960]
 +
** [http://www.uniprot.org/uniprot/O86504 O86504]
 +
** [http://www.uniprot.org/uniprot/O85837 O85837]
 +
** [http://www.uniprot.org/uniprot/P18869 P18869]
 +
** [http://www.uniprot.org/uniprot/P34738 P34738]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=3-isopropylmalate dehydrogenase}}
 +
{{#set: synonymous=threo-ds-3-isopropylmalate dehydrogenase|&beta;-isopropylmalic enzyme}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:16, 14 January 2021

Reaction 3-ISOPROPYLMALDEHYDROG-RXN

  • direction:
    • reversible
  • common-name:
    • 3-isopropylmalate dehydrogenase
  • synonymous:
    • β-isopropylmalic enzyme
    • threo-ds-3-isopropylmalate dehydrogenase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • LEUSYN-PWY, L-leucine biosynthesis:
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-6871, 3-methylbutanol biosynthesis (engineered):
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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