Difference between revisions of "RXN-9758"

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(Created page with "Category:reaction == Reaction 5-OXOPROLINASE-ATP-HYDROLYSING-RXN == * direction: ** left-to-right * common-name: ** 5-oxo-l-prolinase * ec-number: ** [http://enzyme.expasy...")
(Created page with "Category:reaction == Reaction 2.8.2.29-RXN == * direction: ** left-to-right * common-name: ** [heparan sulfate]-glucosamine 3-o-sulfotransferase * ec-number: ** [http://en...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 5-OXOPROLINASE-ATP-HYDROLYSING-RXN ==
+
== Reaction 2.8.2.29-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 5-oxo-l-prolinase
+
** [heparan sulfate]-glucosamine 3-o-sulfotransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.2.9 ec-3.5.2.9]
+
** [http://enzyme.expasy.org/EC/2.8.2.29 ec-2.8.2.29]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[5-OXOPROLINE]][c] '''+''' 1 [[ATP]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[Heparan-sulfate-D-GlcNS]][c] '''+''' 1 [[PAPS]][c] '''=>''' 1 [[3-5-ADP]][c] '''+''' 1 [[Heparan-sulfate-3-N-disulfate]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ14596]]
+
* Gene: [[SJ20108]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-4041]], γ-glutamyl cycle:
+
* [[PWY-6558]], heparan sulfate biosynthesis (late stages):
−
** '''5''' reactions found over '''4''' reactions in the full pathway
+
** '''7''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-7942]], 5-oxo-L-proline metabolism:
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10349 10349]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15462 15462]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00251 R00251]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P97608 P97608]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=5-oxo-l-prolinase}}
+
{{#set: common-name=[heparan sulfate]-glucosamine 3-o-sulfotransferase}}
−
{{#set: ec-number=ec-3.5.2.9}}
+
{{#set: ec-number=ec-2.8.2.29}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 19:02, 14 January 2021

Reaction 2.8.2.29-RXN

  • direction:
    • left-to-right
  • common-name:
    • [heparan sulfate]-glucosamine 3-o-sulfotransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6558, heparan sulfate biosynthesis (late stages):
    • 7 reactions found over 13 reactions in the full pathway

Reconstruction information

External links

Property "Common-name" (as page type) with input value "heparan sulfate]-glucosamine 3-o-sulfotransferase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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