Difference between revisions of "RXN-9847"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-4751 tax-47...")
(Created page with "Category:reaction == Reaction TRYPTOPHAN--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** tryptophan-trna ligase * ec-number: ** [http://enzyme.expasy.o...")
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[[Category:pathway]]
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[[Category:reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168] ==
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== Reaction TRYPTOPHAN--TRNA-LIGASE-RXN ==
* taxonomic-range:
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* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=tax-4751 tax-4751]
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** left-to-right
 
* common-name:
 
* common-name:
** flavin biosynthesis iii (fungi)
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** tryptophan-trna ligase
== Reaction(s) found ==
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* ec-number:
* [[DIOHBUTANONEPSYN-RXN]]
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** [http://enzyme.expasy.org/EC/6.1.1.2 ec-6.1.1.2]
* [[FADSYN-RXN]]
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== Reaction formula ==
* [[GTP-CYCLOHYDRO-II-RXN]]
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* 1 [[ATP]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[TRP-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-TRP-tRNAs]][c] '''+''' 1 [[PPI]][c]
* [[LUMAZINESYN-RXN]]
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== Gene(s) associated with this reaction  ==
* [[RIBOFLAVIN-SYN-RXN]]
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* Gene: [[SJ20749]]
* [[RIBOFLAVINKIN-RXN]]
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** Category: [[annotation]]
* [[RXN-10057]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
== Reaction(s) not found ==
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* Gene: [[SJ21092]]
* [http://metacyc.org/META/NEW-IMAGE?object=RIBOPHOSPHAT-RXN RIBOPHOSPHAT-RXN]
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** Category: [[annotation]]
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10058 RXN-10058]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
{{#set: taxonomic-range=tax-4751}}
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** Category: [[orthology]]
{{#set: common-name=flavin biosynthesis iii (fungi)}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
{{#set: nb reaction found=7}}
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* Gene: [[SJ02283]]
{{#set: completion rate=0.78}}
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** Category: [[annotation]]
{{#set: nb total reaction=9}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
== Pathway(s) ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging:
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24081 24081]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R03664 R03664]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P23381 P23381]
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** [http://www.uniprot.org/uniprot/Q9ZD76 Q9ZD76]
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** [http://www.uniprot.org/uniprot/O84589 O84589]
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** [http://www.uniprot.org/uniprot/Q9PIB4 Q9PIB4]
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** [http://www.uniprot.org/uniprot/Q9CJD1 Q9CJD1]
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** [http://www.uniprot.org/uniprot/P43835 P43835]
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** [http://www.uniprot.org/uniprot/Q9Z7A4 Q9Z7A4]
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** [http://www.uniprot.org/uniprot/Q9WYW2 Q9WYW2]
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** [http://www.uniprot.org/uniprot/O26352 O26352]
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** [http://www.uniprot.org/uniprot/O51038 O51038]
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** [http://www.uniprot.org/uniprot/Q9ZJX4 Q9ZJX4]
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** [http://www.uniprot.org/uniprot/Q9JTQ0 Q9JTQ0]
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** [http://www.uniprot.org/uniprot/Q58810 Q58810]
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** [http://www.uniprot.org/uniprot/O83640 O83640]
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** [http://www.uniprot.org/uniprot/P67590 P67590]
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** [http://www.uniprot.org/uniprot/O67115 O67115]
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** [http://www.uniprot.org/uniprot/P47372 P47372]
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** [http://www.uniprot.org/uniprot/P32921 P32921]
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** [http://www.uniprot.org/uniprot/Q12109 Q12109]
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** [http://www.uniprot.org/uniprot/Q49901 Q49901]
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** [http://www.uniprot.org/uniprot/P75510 P75510]
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** [http://www.uniprot.org/uniprot/O42875 O42875]
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** [http://www.uniprot.org/uniprot/O96771 O96771]
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** [http://www.uniprot.org/uniprot/P17248 P17248]
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** [http://www.uniprot.org/uniprot/P21656 P21656]
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** [http://www.uniprot.org/uniprot/P04803 P04803]
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** [http://www.uniprot.org/uniprot/P00954 P00954]
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</div>
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{{#set: direction=left-to-right}}
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{{#set: common-name=tryptophan-trna ligase}}
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{{#set: ec-number=ec-6.1.1.2}}
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{{#set: nb gene associated=3}}
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{{#set: nb pathway associated=1}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 20:47, 18 December 2020

Reaction TRYPTOPHAN--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • tryptophan-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links