Difference between revisions of "RXN-9969"

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(Created page with "Category:reaction == Reaction RXN0-1134 == * direction: ** left-to-right * common-name: ** pyruvate:[dihydrolipoyllysine-residue acetyltransferase]-lipoyllysine 2-oxidored...")
(Created page with "Category:reaction == Reaction RXN-9969 == * direction: ** left-to-right * common-name: ** cis-prenyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.87 ec-2....")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN0-1134 ==
+
== Reaction RXN-9969 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** pyruvate:[dihydrolipoyllysine-residue acetyltransferase]-lipoyllysine 2-oxidoreductase
+
** cis-prenyltransferase
** pyruvate dehydrogenase (nad+)
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/1.2.4.1 ec-1.2.4.1]
+
** [http://enzyme.expasy.org/EC/2.5.1.87 ec-2.5.1.87]
 +
* synonymous:
 +
** (2e,6e)-farnesyl diphosphate di-trans,poly-cis-polyprenyl diphosphate synthase
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[PROTON]][c] '''+''' 1 [[PYRUVATE]][c] '''+''' 1 [[Pyruvate-dehydrogenase-lipoate]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[Pyruvate-dehydrogenase-acetylDHlipoyl]][c]
+
* 13 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[FARNESYL-PP]][c] '''=>''' 1 [[CPD-10712]][c] '''+''' 13 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ09312]]
+
* Gene: [[SJ18388]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ00971]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ14925]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ01042]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ19470]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PYRUVDEHYD-PWY]], pyruvate decarboxylation to acetyl CoA:
+
* [[PWY-6129]], dolichol and dolichyl phosphate biosynthesis:
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR123087
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R01699 R01699]
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/P06959 P06959]
 
** [http://www.uniprot.org/uniprot/P26267 P26267]
 
** [http://www.uniprot.org/uniprot/P35485 P35485]
 
** [http://www.uniprot.org/uniprot/Q59097 Q59097]
 
** [http://www.uniprot.org/uniprot/Q9N1X8 Q9N1X8]
 
** [http://www.uniprot.org/uniprot/P45119 P45119]
 
** [http://www.uniprot.org/uniprot/P11966 P11966]
 
** [http://www.uniprot.org/uniprot/P35488 P35488]
 
** [http://www.uniprot.org/uniprot/P47515 P47515]
 
** [http://www.uniprot.org/uniprot/P21882 P21882]
 
** [http://www.uniprot.org/uniprot/P47516 P47516]
 
** [http://www.uniprot.org/uniprot/P21881 P21881]
 
** [http://www.uniprot.org/uniprot/P21873 P21873]
 
** [http://www.uniprot.org/uniprot/P16387 P16387]
 
** [http://www.uniprot.org/uniprot/P0AFG8 P0AFG8]
 
** [http://www.uniprot.org/uniprot/P08559 P08559]
 
** [http://www.uniprot.org/uniprot/P11177 P11177]
 
** [http://www.uniprot.org/uniprot/P29803 P29803]
 
** [http://www.uniprot.org/uniprot/P29804 P29804]
 
** [http://www.uniprot.org/uniprot/P26284 P26284]
 
** [http://www.uniprot.org/uniprot/Q9JU08 Q9JU08]
 
** [http://www.uniprot.org/uniprot/Q9CJD6 Q9CJD6]
 
** [http://www.uniprot.org/uniprot/Q9JU07 Q9JU07]
 
** [http://www.uniprot.org/uniprot/Q9CJD5 Q9CJD5]
 
** [http://www.uniprot.org/uniprot/Q09171 Q09171]
 
** [http://www.uniprot.org/uniprot/P52901 P52901]
 
** [http://www.uniprot.org/uniprot/P79931 P79931]
 
** [http://www.uniprot.org/uniprot/P79932 P79932]
 
** [http://www.uniprot.org/uniprot/Q9D051 Q9D051]
 
** [http://www.uniprot.org/uniprot/P10801 P10801]
 
** [http://www.uniprot.org/uniprot/P21874 P21874]
 
** [http://www.uniprot.org/uniprot/P49432 P49432]
 
** [http://www.uniprot.org/uniprot/Q59820 Q59820]
 
** [http://www.uniprot.org/uniprot/P35486 P35486]
 
** [http://www.uniprot.org/uniprot/P35487 P35487]
 
** [http://www.uniprot.org/uniprot/Q06437 Q06437]
 
** [http://www.uniprot.org/uniprot/P32473 P32473]
 
** [http://www.uniprot.org/uniprot/Q59107 Q59107]
 
** [http://www.uniprot.org/uniprot/P73405 P73405]
 
** [http://www.uniprot.org/uniprot/Q49109 Q49109]
 
** [http://www.uniprot.org/uniprot/O48685 O48685]
 
** [http://www.uniprot.org/uniprot/P52902 P52902]
 
** [http://www.uniprot.org/uniprot/P52904 P52904]
 
** [http://www.uniprot.org/uniprot/P52903 P52903]
 
** [http://www.uniprot.org/uniprot/O66112 O66112]
 
** [http://www.uniprot.org/uniprot/Q9Y8I5 Q9Y8I5]
 
** [http://www.uniprot.org/uniprot/Q9Y8I6 Q9Y8I6]
 
** [http://www.uniprot.org/uniprot/O69478 O69478]
 
** [http://www.uniprot.org/uniprot/P10802 P10802]
 
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=pyruvate:[dihydrolipoyllysine-residue acetyltransferase]-lipoyllysine 2-oxidoreductase|pyruvate dehydrogenase (nad+)}}
+
{{#set: common-name=cis-prenyltransferase}}
{{#set: ec-number=ec-1.2.4.1}}
+
{{#set: ec-number=ec-2.5.1.87}}
{{#set: nb gene associated=5}}
+
{{#set: synonymous=(2e,6e)-farnesyl diphosphate di-trans,poly-cis-polyprenyl diphosphate synthase}}
 +
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction RXN-9969

  • direction:
    • left-to-right
  • common-name:
    • cis-prenyltransferase
  • ec-number:
  • synonymous:
    • (2e,6e)-farnesyl diphosphate di-trans,poly-cis-polyprenyl diphosphate synthase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6129, dolichol and dolichyl phosphate biosynthesis:
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR123087