Difference between revisions of "RXN0-2601"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2157 tax-2157...")
(Created page with "Category:reaction == Reaction RXN0-2601 == * direction: ** left-to-right * common-name: ** dna-(apurinic or apyrimidinic site) lyase ** dna glycosylase * ec-number: ** [ht...")
 
(8 intermediate revisions by 4 users not shown)
Line 1: Line 1:
−
[[Category:pathway]]
+
[[Category:reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922] ==
+
== Reaction RXN0-2601 ==
−
* taxonomic-range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2157 tax-2157]
+
** left-to-right
−
** [http://metacyc.org/META/NEW-IMAGE?object=tax-33208 tax-33208]
 
−
** [http://metacyc.org/META/NEW-IMAGE?object=tax-4751 tax-4751]
 
−
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
 
−
** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-33090]
 
 
* common-name:
 
* common-name:
−
** mevalonate pathway i
+
** dna-(apurinic or apyrimidinic site) lyase
−
== Reaction(s) found ==
+
** dna glycosylase
−
* [[1.1.1.34-RXN]]
+
* ec-number:
−
* [[ACETYL-COA-ACETYLTRANSFER-RXN]]
+
** [http://enzyme.expasy.org/EC/4.2.99.18 ec-4.2.99.18]
−
* [[DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN]]
+
== Reaction formula ==
−
* [[HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN]]
+
* 1 [[Damaged-DNA-Pyrimidine]][c] '''=>''' 1 [[DNA-containing-a-Apyrimidinic-Sites]][c]
−
* [[IPPISOM-RXN]]
+
== Gene(s) associated with this reaction  ==
−
* [[MEVALONATE-KINASE-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[PHOSPHOMEVALONATE-KINASE-RXN]]
+
* Gene: [[SJ01041]]
−
== Reaction(s) not found ==
+
** Category: [[orthology]]
−
All reactions of this pathways are in present
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
{{#set: taxonomic-range=tax-4751|tax-33090|tax-33208|tax-2157|tax-2}}
+
* Gene: [[SJ12112]]
−
{{#set: common-name=mevalonate pathway i}}
+
** Category: [[orthology]]
−
{{#set: nb reaction found=7}}
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
{{#set: completion rate=1.0}}
+
* Gene: [[SJ17648]]
−
{{#set: nb total reaction=7}}
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ01489]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10690]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12532]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ04992]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04314]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12201]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00230]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12275]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ18415]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 +
== Pathway(s) ==
 +
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
== External links  ==
 +
* METANETX-RXN : MNXR123145
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=dna glycosylase|dna-(apurinic or apyrimidinic site) lyase}}
 +
{{#set: ec-number=ec-4.2.99.18}}
 +
{{#set: nb gene associated=12}}
 +
{{#set: nb pathway associated=0}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction RXN0-2601

  • direction:
    • left-to-right
  • common-name:
    • dna-(apurinic or apyrimidinic site) lyase
    • dna glycosylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR123145





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN0-2601&oldid=143166"