Difference between revisions of "RXN0-384"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACOA120OR ACOA120OR] == * direction: ** left-to-right * common-name: ** lauroyl-coa:(acceptor) 2,3-...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FARNESYLTRANSTRANSFERASE-RXN FARNESYLTRANSTRANSFERASE-RXN] == * direction: ** left-to-right * commo...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACOA120OR ACOA120OR] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FARNESYLTRANSTRANSFERASE-RXN FARNESYLTRANSTRANSFERASE-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** lauroyl-coa:(acceptor) 2,3-oxidoreductase
+
** farnesyltranstransferase
 +
** geranylgeranyl diphosphate synthase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/2.5.1.29 ec-2.5.1.29]
 
== Reaction formula ==
 
== Reaction formula ==
* 1.0 [[FAD]][x] '''+''' 1.0 [[LAUROYLCOA-CPD]][x] '''=>''' 1.0 [[CPD-7222]][x] '''+''' 1.0 [[FADH2]][x]
+
* 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[FARNESYL-PP]][c] '''=>''' 1 [[GERANYLGERANYL-PP]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ13468]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ13532]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10781]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ17982]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ20033]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02885]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10346]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
* Gene: [[SJ07909]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
** Category: [[orthology]]
+
</div>
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7492]], paspaline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7492 PWY-7492]
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6659]], fusicoccin A biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6659 PWY-6659]
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7517]], brassicicene C biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7517 PWY-7517]
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6691]], plaunotol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6691 PWY-6691]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7721]], methyl phomopsenoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7721 PWY-7721]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5120]], geranylgeranyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5120 PWY-5120]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7720]], ophiobolin F biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7720 PWY-7720]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17654 17654]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02061 R02061]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P39464 P39464]
 +
** [http://www.uniprot.org/uniprot/P24322 P24322]
 +
** [http://www.uniprot.org/uniprot/P80042 P80042]
 +
** [http://www.uniprot.org/uniprot/Q12051 Q12051]
 +
** [http://www.uniprot.org/uniprot/P95999 P95999]
 +
** [http://www.uniprot.org/uniprot/P48368 P48368]
 +
** [http://www.uniprot.org/uniprot/P93227 P93227]
 +
** [http://www.uniprot.org/uniprot/P93228 P93228]
 +
** [http://www.uniprot.org/uniprot/Q42698 Q42698]
 +
** [http://www.uniprot.org/uniprot/Q43133 Q43133]
 +
** [http://www.uniprot.org/uniprot/Q42866 Q42866]
 +
** [http://www.uniprot.org/uniprot/P54976 P54976]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=lauroyl-coa:(acceptor) 2,3-oxidoreductase}}
+
{{#set: common-name=geranylgeranyl diphosphate synthase|farnesyltranstransferase}}
{{#set: nb gene associated=2}}
+
{{#set: ec-number=ec-2.5.1.29}}
{{#set: nb pathway associated=0}}
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{{#set: nb gene associated=6}}
{{#set: reconstruction category=orthology}}
+
{{#set: nb pathway associated=8}}
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 14:26, 26 August 2019

Reaction FARNESYLTRANSTRANSFERASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • farnesyltranstransferase
    • geranylgeranyl diphosphate synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7492, paspaline biosynthesis: PWY-7492
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-6659, fusicoccin A biosynthesis: PWY-6659
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-7517, brassicicene C biosynthesis: PWY-7517
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6691, plaunotol biosynthesis: PWY-6691
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7721, methyl phomopsenoate biosynthesis: PWY-7721
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7736, stellatic acid biosynthesis: PWY-7736
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-5120, geranylgeranyl diphosphate biosynthesis: PWY-5120
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7720, ophiobolin F biosynthesis: PWY-7720
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links