Difference between revisions of "RXN0-5224"
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(Created page with "Category:reaction == Reaction RXN-17889 == * direction: ** left-to-right * common-name: ** arginyl-trna--protein transferase * ec-number: ** [http://enzyme.expasy.org/EC/2...") |
(Created page with "Category:reaction == Reaction GLYCPDIESTER-RXN == * direction: ** left-to-right * common-name: ** glycerophosphoryl diester phosphodiesterase, periplasmic * ec-number: **...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction GLYCPDIESTER-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** glycerophosphoryl diester phosphodiesterase, periplasmic |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/3.1.4.46 ec-3.1.4.46] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[Glycerophosphodiesters]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Alcohols]][c] '''+''' 1 [[GLYCEROL-3P]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ16458]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ00999]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-6952]], glycerophosphodiester degradation: |
− | ** ''' | + | ** '''2''' reactions found over '''2''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12970 12970] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00857 R00857] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q99387 Q99387] | ||
+ | ** [http://www.uniprot.org/uniprot/P10908 P10908] | ||
+ | ** [http://www.uniprot.org/uniprot/Q06282 Q06282] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9V208 Q9V208] | ||
+ | ** [http://www.uniprot.org/uniprot/P09394 P09394] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S3K5 Q9S3K5] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=glycerophosphoryl diester phosphodiesterase, periplasmic}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-3.1.4.46}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=2}} |
{{#set: nb pathway associated=1}} | {{#set: nb pathway associated=1}} | ||
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 11:20, 15 January 2021
Contents
Reaction GLYCPDIESTER-RXN
- direction:
- left-to-right
- common-name:
- glycerophosphoryl diester phosphodiesterase, periplasmic
- ec-number:
Reaction formula
- 1 Glycerophosphodiesters[c] + 1 WATER[c] => 1 Alcohols[c] + 1 GLYCEROL-3P[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ16458
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ00999
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6952, glycerophosphodiester degradation:
- 2 reactions found over 2 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links