Difference between revisions of "RXN0-5224"

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(Created page with "Category:reaction == Reaction GLYCPDIESTER-RXN == * direction: ** left-to-right * common-name: ** glycerophosphoryl diester phosphodiesterase, periplasmic * ec-number: **...")
(Created page with "Category:reaction == Reaction 4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN == * direction: ** left-to-right * common-name: ** 4-hydroxyphenylpyruvate dioxygenase * ec-number: *...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLYCPDIESTER-RXN ==
+
== Reaction 4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** glycerophosphoryl diester phosphodiesterase, periplasmic
+
** 4-hydroxyphenylpyruvate dioxygenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.4.46 ec-3.1.4.46]
+
** [http://enzyme.expasy.org/EC/1.13.11.27 ec-1.13.11.27]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Glycerophosphodiesters]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Alcohols]][c] '''+''' 1 [[GLYCEROL-3P]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[P-HYDROXY-PHENYLPYRUVATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[HOMOGENTISATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ16458]]
+
* Gene: [[SJ08954]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08953]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ00999]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6952]], glycerophosphodiester degradation:
+
* [[PWY-7432]], L-phenylalanine biosynthesis III (cytosolic, plants):
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[TYRFUMCAT-PWY]], L-tyrosine degradation I:
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-1581]], plastoquinol-9 biosynthesis I:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-1422]], vitamin E biosynthesis (tocopherols):
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR94843
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12970 12970]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16190 16190]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00857 R00857]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02521 R02521]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q99387 Q99387]
+
** [http://www.uniprot.org/uniprot/P32754 P32754]
−
** [http://www.uniprot.org/uniprot/P10908 P10908]
+
** [http://www.uniprot.org/uniprot/Q02110 Q02110]
−
** [http://www.uniprot.org/uniprot/Q06282 Q06282]
+
** [http://www.uniprot.org/uniprot/P32755 P32755]
−
** [http://www.uniprot.org/uniprot/Q9V208 Q9V208]
+
** [http://www.uniprot.org/uniprot/O48604 O48604]
−
** [http://www.uniprot.org/uniprot/P09394 P09394]
+
** [http://www.uniprot.org/uniprot/O23920 O23920]
−
** [http://www.uniprot.org/uniprot/Q9S3K5 Q9S3K5]
+
** [http://www.uniprot.org/uniprot/P93836 P93836]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=glycerophosphoryl diester phosphodiesterase, periplasmic}}
+
{{#set: common-name=4-hydroxyphenylpyruvate dioxygenase}}
−
{{#set: ec-number=ec-3.1.4.46}}
+
{{#set: ec-number=ec-1.13.11.27}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:33, 15 March 2021

Reaction 4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • 4-hydroxyphenylpyruvate dioxygenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7432, L-phenylalanine biosynthesis III (cytosolic, plants):
    • 3 reactions found over 2 reactions in the full pathway
  • TYRFUMCAT-PWY, L-tyrosine degradation I:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-1581, plastoquinol-9 biosynthesis I:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-1422, vitamin E biosynthesis (tocopherols):
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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