Difference between revisions of "RXN0-5330"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction POLYNUCLEOTIDE-5-HYDROXYL-KINASE-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.78 ec-2.7.1.78] == Reac...")
(Created page with "Category:reaction == Reaction RXN0-5330 == * direction: ** left-to-right * common-name: ** nadh:ubiquinone oxidoreductase ** nadh dehydrogenase (ubiquinone) * ec-number: *...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction POLYNUCLEOTIDE-5-HYDROXYL-KINASE-RXN ==
+
== Reaction RXN0-5330 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** nadh:ubiquinone oxidoreductase
 +
** nadh dehydrogenase (ubiquinone)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.1.78 ec-2.7.1.78]
+
** [http://enzyme.expasy.org/EC/1.6.5.9 ec-1.6.5.9]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[5-Dephospho-DNA]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[5-Phospho-DNA]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Ubiquinones]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[Ubiquinols]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ14818]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ19412]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ15450]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ15310]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10422]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ02471]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03600]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21333]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ06572]]
+
* Gene: [[SJ14995]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ05715]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ09960]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16410]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21017]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ22333]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21895]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY0-1573]], nitrate reduction VIIIb (dissimilatory):
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7269]], mitochondrial NADPH production (yeast):
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY0-1568]], NADH to cytochrome bd oxidase electron transfer II:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY0-1567]], NADH to cytochrome bo oxidase electron transfer II:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7279]], aerobic respiration II (cytochrome c) (yeast):
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
* METANETX-RXN : MNXR123249
−
** [http://www.genome.jp/dbget-bin/www_bget?R03840 R03840]
+
* RHEA:
−
{{#set: direction=reversible}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23153 23153]
−
{{#set: ec-number=ec-2.7.1.78}}
+
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=2}}
+
{{#set: common-name=nadh:ubiquinone oxidoreductase|nadh dehydrogenase (ubiquinone)}}
−
{{#set: nb pathway associated=0}}
+
{{#set: ec-number=ec-1.6.5.9}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: nb gene associated=14}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: nb pathway associated=5}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction RXN0-5330

  • direction:
    • left-to-right
  • common-name:
    • nadh:ubiquinone oxidoreductase
    • nadh dehydrogenase (ubiquinone)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1573, nitrate reduction VIIIb (dissimilatory):
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7269, mitochondrial NADPH production (yeast):
    • 5 reactions found over 5 reactions in the full pathway
  • PWY0-1568, NADH to cytochrome bd oxidase electron transfer II:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1567, NADH to cytochrome bo oxidase electron transfer II:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7279, aerobic respiration II (cytochrome c) (yeast):
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR123249
  • RHEA:





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN0-5330&oldid=143013"