Difference between revisions of "RXN0-5330"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=GALACTCAT-PWY GALACTCAT-PWY] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2...")
(Created page with "Category:reaction == Reaction RXN0-5330 == * direction: ** left-to-right * common-name: ** nadh:ubiquinone oxidoreductase ** nadh dehydrogenase (ubiquinone) * ec-number: *...")
 
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=GALACTCAT-PWY GALACTCAT-PWY] ==
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== Reaction RXN0-5330 ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2157 tax-2157]
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** left-to-right
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
 
 
* common-name:
 
* common-name:
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** d-galactonate degradation
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** nadh:ubiquinone oxidoreductase
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== Reaction(s) found ==
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** nadh dehydrogenase (ubiquinone)
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* [[DEHYDDEOXPHOSGALACT-ALDOL-RXN]]
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* ec-number:
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== Reaction(s) not found ==
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** [http://enzyme.expasy.org/EC/1.6.5.9 ec-1.6.5.9]
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* [http://metacyc.org/META/NEW-IMAGE?object=GALACTONDEHYDRAT-RXN GALACTONDEHYDRAT-RXN]
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== Reaction formula ==
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* [http://metacyc.org/META/NEW-IMAGE?object=DEHYDDEOXGALACTKIN-RXN DEHYDDEOXGALACTKIN-RXN]
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* 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Ubiquinones]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[Ubiquinols]][c]
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{{#set: taxonomic-range=tax-2157|tax-2}}
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== Gene(s) associated with this reaction  ==
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{{#set: common-name=d-galactonate degradation}}
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: nb reaction found=1}}
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* Gene: [[SJ19412]]
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{{#set: completion rate=0.33}}
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** Category: [[annotation]]
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{{#set: nb total reaction=3}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ15450]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ15310]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ10422]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ02471]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ03600]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ21333]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ14995]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ05715]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ09960]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ16410]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ21017]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ22333]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ21895]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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</div>
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== Pathway(s) ==
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* [[PWY0-1573]], nitrate reduction VIIIb (dissimilatory):
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7269]], mitochondrial NADPH production (yeast):
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY0-1568]], NADH to cytochrome bd oxidase electron transfer II:
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY0-1567]], NADH to cytochrome bo oxidase electron transfer II:
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7279]], aerobic respiration II (cytochrome c) (yeast):
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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* METANETX-RXN : MNXR123249
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23153 23153]
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{{#set: direction=left-to-right}}
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{{#set: common-name=nadh:ubiquinone oxidoreductase|nadh dehydrogenase (ubiquinone)}}
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{{#set: ec-number=ec-1.6.5.9}}
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{{#set: nb gene associated=14}}
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{{#set: nb pathway associated=5}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction RXN0-5330

  • direction:
    • left-to-right
  • common-name:
    • nadh:ubiquinone oxidoreductase
    • nadh dehydrogenase (ubiquinone)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1573, nitrate reduction VIIIb (dissimilatory):
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7269, mitochondrial NADPH production (yeast):
    • 5 reactions found over 5 reactions in the full pathway
  • PWY0-1568, NADH to cytochrome bd oxidase electron transfer II:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1567, NADH to cytochrome bo oxidase electron transfer II:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7279, aerobic respiration II (cytochrome c) (yeast):
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR123249
  • RHEA:





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