Difference between revisions of "RXN0-5330"

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(Created page with "Category:reaction == Reaction 3.1.4.11-RXN == * direction: ** left-to-right * common-name: ** phosphatidylinositol 4,5-bisphosphate lipase c ** phosphatidylinositol phosph...")
(Created page with "Category:reaction == Reaction RXN0-5330 == * direction: ** left-to-right * common-name: ** nadh:ubiquinone oxidoreductase ** nadh dehydrogenase (ubiquinone) * ec-number: *...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.1.4.11-RXN ==
+
== Reaction RXN0-5330 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** phosphatidylinositol 4,5-bisphosphate lipase c
+
** nadh:ubiquinone oxidoreductase
−
** phosphatidylinositol phospholipase c
+
** nadh dehydrogenase (ubiquinone)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.4.11 ec-3.1.4.11]
+
** [http://enzyme.expasy.org/EC/1.6.5.9 ec-1.6.5.9]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PHOSPHATIDYL-MYO-INOSITOL-45-BISPHOSPHA]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DIACYLGLYCEROL]][c] '''+''' 1 [[INOSITOL-1-4-5-TRISPHOSPHATE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Ubiquinones]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[Ubiquinols]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ20221]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ19412]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ15450]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ15310]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10422]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ02471]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03600]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ16244]]
+
* Gene: [[SJ21333]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14995]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ05715]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ09960]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16410]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21017]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ16245]]
+
* Gene: [[SJ22333]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21895]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6351]], D-myo-inositol (1,4,5)-trisphosphate biosynthesis:
+
* [[PWY0-1573]], nitrate reduction VIIIb (dissimilatory):
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7039]], phosphatidate metabolism, as a signaling molecule:
+
* [[PWY-7269]], mitochondrial NADPH production (yeast):
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[LIPASYN-PWY]], phospholipases:
 
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6367]], D-myo-inositol-5-phosphate metabolism:
+
* [[PWY0-1568]], NADH to cytochrome bd oxidase electron transfer II:
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY0-1567]], NADH to cytochrome bo oxidase electron transfer II:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7279]], aerobic respiration II (cytochrome c) (yeast):
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR123249
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=33180 33180]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23153 23153]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03435 R03435]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P10687 P10687]
 
−
** [http://www.uniprot.org/uniprot/P10894 P10894]
 
−
** [http://www.uniprot.org/uniprot/P10686 P10686]
 
−
** [http://www.uniprot.org/uniprot/P24135 P24135]
 
−
** [http://www.uniprot.org/uniprot/P19174 P19174]
 
−
** [http://www.uniprot.org/uniprot/Q00722 Q00722]
 
−
** [http://www.uniprot.org/uniprot/Q02158 Q02158]
 
−
** [http://www.uniprot.org/uniprot/P32383 P32383]
 
−
** [http://www.uniprot.org/uniprot/Q9TS13 Q9TS13]
 
−
** [http://www.uniprot.org/uniprot/Q24284 Q24284]
 
−
** [http://www.uniprot.org/uniprot/P51178 P51178]
 
−
** [http://www.uniprot.org/uniprot/P10688 P10688]
 
−
** [http://www.uniprot.org/uniprot/P10895 P10895]
 
−
** [http://www.uniprot.org/uniprot/Q60450 Q60450]
 
−
** [http://www.uniprot.org/uniprot/P08487 P08487]
 
−
** [http://www.uniprot.org/uniprot/Q9STZ3 Q9STZ3]
 
−
** [http://www.uniprot.org/uniprot/P40977 P40977]
 
−
** [http://www.uniprot.org/uniprot/Q21754 Q21754]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=phosphatidylinositol 4,5-bisphosphate lipase c|phosphatidylinositol phospholipase c}}
+
{{#set: common-name=nadh:ubiquinone oxidoreductase|nadh dehydrogenase (ubiquinone)}}
−
{{#set: ec-number=ec-3.1.4.11}}
+
{{#set: ec-number=ec-1.6.5.9}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=14}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=5}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction RXN0-5330

  • direction:
    • left-to-right
  • common-name:
    • nadh:ubiquinone oxidoreductase
    • nadh dehydrogenase (ubiquinone)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1573, nitrate reduction VIIIb (dissimilatory):
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7269, mitochondrial NADPH production (yeast):
    • 5 reactions found over 5 reactions in the full pathway
  • PWY0-1568, NADH to cytochrome bd oxidase electron transfer II:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1567, NADH to cytochrome bo oxidase electron transfer II:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7279, aerobic respiration II (cytochrome c) (yeast):
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR123249
  • RHEA:





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