Difference between revisions of "RXN0-6382"

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(Created page with "Category:reaction == Reaction CHOLINE-KINASE-RXN == * direction: ** left-to-right * common-name: ** choline kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.32 ec...")
(Created page with "Category:reaction == Reaction RXN-9679 == * direction: ** left-to-right * common-name: ** sarcosine n-methyltransferase ** sarcosine-dimethylglycine methyltransferase * sy...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction CHOLINE-KINASE-RXN ==
+
== Reaction RXN-9679 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** choline kinase
+
** sarcosine n-methyltransferase
−
* ec-number:
+
** sarcosine-dimethylglycine methyltransferase
−
** [http://enzyme.expasy.org/EC/2.7.1.32 ec-2.7.1.32]
+
* synonymous:
 +
** sarcosine dimethylglycine n-methyltransferase
 +
** glycine sarcosine n-methyltransferase
 +
** s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase
 +
** gsdmt
 +
** apdmt
 +
** s-adenosyl-l-methionine:sarcosine n-methyltransferase
 +
** glycine-sarcosine methyltransferase
 +
** gmt
 +
** glycine sarcosine dimethylglycine n-methyltransferase
 +
** sdmt
 +
** gsmt
 +
** apgsmt
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CHOLINE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PHOSPHORYL-CHOLINE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[SARCOSINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DIMETHYL-GLYCINE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18340]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ11087]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ12128]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15347]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02540]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02539]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12119]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10116]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12116]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ03081]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ18177]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12118]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14716]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7782]], plasmalogen biosynthesis:
+
* [[P541-PWY]], glycine betaine biosynthesis IV (from glycine):
−
** '''11''' reactions found over '''16''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY3O-450]], phosphatidylcholine biosynthesis I:
+
* [[PWY-6004]], glycine betaine biosynthesis V (from glycine):
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7818]], type IV lipoteichoic acid biosynthesis (S. pneumoniae):
 
−
** '''2''' reactions found over '''19''' reactions in the full pathway
 
−
* [[PWY-7886]], cell-surface glycoconjugate-linked phosphocholine biosynthesis:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R07243 R07243]
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12838 12838]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15454 15454]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01021 R01021]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P20485 P20485]
 
−
** [http://www.uniprot.org/uniprot/Q01134 Q01134]
 
−
** [http://www.uniprot.org/uniprot/Q42809 Q42809]
 
−
** [http://www.uniprot.org/uniprot/Q42810 Q42810]
 
−
** [http://www.uniprot.org/uniprot/Q42811 Q42811]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=choline kinase}}
+
{{#set: common-name=sarcosine n-methyltransferase|sarcosine-dimethylglycine methyltransferase}}
−
{{#set: ec-number=ec-2.7.1.32}}
+
{{#set: synonymous=gmt|gsdmt|apgsmt|s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase|s-adenosyl-l-methionine:sarcosine n-methyltransferase|glycine sarcosine dimethylglycine n-methyltransferase|sarcosine dimethylglycine n-methyltransferase|sdmt|glycine-sarcosine methyltransferase|glycine sarcosine n-methyltransferase|gsmt|apdmt}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=11}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 19:00, 14 January 2021

Reaction RXN-9679

  • direction:
    • left-to-right
  • common-name:
    • sarcosine n-methyltransferase
    • sarcosine-dimethylglycine methyltransferase
  • synonymous:
    • sarcosine dimethylglycine n-methyltransferase
    • glycine sarcosine n-methyltransferase
    • s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase
    • gsdmt
    • apdmt
    • s-adenosyl-l-methionine:sarcosine n-methyltransferase
    • glycine-sarcosine methyltransferase
    • gmt
    • glycine sarcosine dimethylglycine n-methyltransferase
    • sdmt
    • gsmt
    • apgsmt

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P541-PWY, glycine betaine biosynthesis IV (from glycine):
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6004, glycine betaine biosynthesis V (from glycine):
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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