Difference between revisions of "RXN0-6382"

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(Created page with "Category:reaction == Reaction RXN-9679 == * direction: ** left-to-right * common-name: ** sarcosine n-methyltransferase ** sarcosine-dimethylglycine methyltransferase * sy...")
(Created page with "Category:reaction == Reaction TransportSeed-CARBON-DIOXIDE == * direction: ** left-to-right == Reaction formula == * 1.0 CARBON-DIOXIDE[e] '''=>''' 1.0 CARBON-DIOXID...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-9679 ==
+
== Reaction TransportSeed-CARBON-DIOXIDE ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
* common-name:
 
** sarcosine n-methyltransferase
 
** sarcosine-dimethylglycine methyltransferase
 
* synonymous:
 
** sarcosine dimethylglycine n-methyltransferase
 
** glycine sarcosine n-methyltransferase
 
** s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase
 
** gsdmt
 
** apdmt
 
** s-adenosyl-l-methionine:sarcosine n-methyltransferase
 
** glycine-sarcosine methyltransferase
 
** gmt
 
** glycine sarcosine dimethylglycine n-methyltransferase
 
** sdmt
 
** gsmt
 
** apgsmt
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[SARCOSINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DIMETHYL-GLYCINE]][c] '''+''' 1 [[PROTON]][c]
+
* 1.0 [[CARBON-DIOXIDE]][e] '''=>''' 1.0 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* Gene: [[SJ11087]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ12128]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ02540]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ02539]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ12119]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ10116]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ12116]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ03081]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ18177]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ12118]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ14716]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[P541-PWY]], glycine betaine biosynthesis IV (from glycine):
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
* [[PWY-6004]], glycine betaine biosynthesis V (from glycine):
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from extracellular to cytosol compartment
 
== External links  ==
 
== External links  ==
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R07243 R07243]
 
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15454 15454]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=sarcosine n-methyltransferase|sarcosine-dimethylglycine methyltransferase}}
+
{{#set: nb gene associated=0}}
{{#set: synonymous=gmt|gsdmt|apgsmt|s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase|s-adenosyl-l-methionine:sarcosine n-methyltransferase|glycine sarcosine dimethylglycine n-methyltransferase|sarcosine dimethylglycine n-methyltransferase|sdmt|glycine-sarcosine methyltransferase|glycine sarcosine n-methyltransferase|gsmt|apdmt}}
+
{{#set: nb pathway associated=0}}
{{#set: nb gene associated=11}}
+
{{#set: reconstruction category=manual}}
{{#set: nb pathway associated=2}}
+
{{#set: reconstruction tool=curation}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=import_from_medium}}
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 

Revision as of 11:20, 15 January 2021

Reaction TransportSeed-CARBON-DIOXIDE

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links