Difference between revisions of "RXN0-6382"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSNACMURPENTATRANS-RXN PHOSNACMURPENTATRANS-RXN] == * direction: ** left-to-right * common-name:...")
(Created page with "Category:reaction == Reaction RXN0-6382 == * direction: ** left-to-right * common-name: ** nucleotide diphosphatase * ec-number: ** [http://enzyme.expasy.org/EC/3.6.1.66 e...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSNACMURPENTATRANS-RXN PHOSNACMURPENTATRANS-RXN] ==
+
== Reaction RXN0-6382 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** udp-n-acetylmuramoyl-l-alanyl-d-glutamyl-meso-2,6-diaminopimelyl-d-alanyl-d-alanine:undecaprenyl-phosphate transferase
+
** nucleotide diphosphatase
−
** phospho-n-acetylmuramoyl-pentapeptide-transferase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.8.13 ec-2.7.8.13]
+
** [http://enzyme.expasy.org/EC/3.6.1.66 ec-3.6.1.66]
 +
** [http://enzyme.expasy.org/EC/3.6.1.9 ec-3.6.1.9]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[C1]][c] '''+''' 1 [[CPD-9646]][c] '''=>''' 1 [[C5]][c] '''+''' 1 [[UMP]][c]
+
* 1 [[ITP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[IMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02910]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ19894]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ19893]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ22529]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ08856]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ08998]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ12166]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04934]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ07337]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PEPTIDOGLYCANSYN-PWY]], peptidoglycan biosynthesis I (meso-diaminopimelate containing): [http://metacyc.org/META/NEW-IMAGE?object=PEPTIDOGLYCANSYN-PWY PEPTIDOGLYCANSYN-PWY]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR102056
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28387 28387]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29400 29400]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05630 R05630]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00720 R00720]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q55986 Q55986]
 
−
** [http://www.uniprot.org/uniprot/P45062 P45062]
 
−
** [http://www.uniprot.org/uniprot/Q03521 Q03521]
 
−
** [http://www.uniprot.org/uniprot/O25235 O25235]
 
−
** [http://www.uniprot.org/uniprot/Q9JSZ3 Q9JSZ3]
 
−
** [http://www.uniprot.org/uniprot/Q9PI72 Q9PI72]
 
−
** [http://www.uniprot.org/uniprot/P37585 P37585]
 
−
** [http://www.uniprot.org/uniprot/P0A6W3 P0A6W3]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=phospho-n-acetylmuramoyl-pentapeptide-transferase|udp-n-acetylmuramoyl-l-alanyl-d-glutamyl-meso-2,6-diaminopimelyl-d-alanyl-d-alanine:undecaprenyl-phosphate transferase}}
+
{{#set: common-name=nucleotide diphosphatase}}
−
{{#set: ec-number=ec-2.7.8.13}}
+
{{#set: ec-number=ec-3.6.1.9|ec-3.6.1.66}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=8}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction RXN0-6382

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR102056
  • RHEA:
  • LIGAND-RXN:





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